View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12984_low_7 (Length: 591)

Name: NF12984_low_7
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12984_low_7
NF12984_low_7
[»] chr2 (1 HSPs)
chr2 (1-248)||(42836944-42837186)
[»] chr1 (2 HSPs)
chr1 (384-589)||(29494874-29495077)
chr1 (248-313)||(29494737-29494801)
[»] chr7 (4 HSPs)
chr7 (384-586)||(6607944-6608144)
chr7 (384-586)||(6625962-6626156)
chr7 (248-313)||(6626652-6626717)
chr7 (248-313)||(6607504-6607564)
[»] chr6 (2 HSPs)
chr6 (406-586)||(19843237-19843415)
chr6 (244-313)||(19843075-19843144)
[»] chr3 (1 HSPs)
chr3 (406-586)||(9793666-9793838)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 42837186 - 42836944
Alignment:
Q  1 atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggcgcggctaccacgagcaacttctcttgggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||    
T  42837186 atgattgattccgatcagatcaattctccaagcagtgcagcgatcttcaggttactggtatggaagcggc-----taccacgagcaactcctcttgggtt 42837092  T
Q  101 ttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtcttatatagtagagaatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42837091 ttccggtgagttggtagtttctaatacactatgtcgatctagggttttggttttattgtttaaaacaaggattactctggtcttatatagtagagaatac 42836992  T
Q  201 ttggtattgggcttttgtttatctcgtttaaaaatataataatttata 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42836991 ttggtattgggcttttgtttatctcgtttaaaaatataataatttata 42836944  T

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Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 384 - 589
Target Start/End: Original strand, 29494874 - 29495077
Alignment:
Q  384 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 483  Q
    ||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||    
T  29494874 ctgtagcagaggattcgtcccatctccctctcccatgccatttcccttttctcccaactctagcacctc--gcgagatttcaccgtcgccgccgtcgatc 29494971  T
Q  484 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 583  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  29494972 ttcgactctcccctttcacccgtcgctgattgaaatccattgtgtctccattattatctatttgtgctctctctcgtcgccggttttctttcaaccgtag 29495071  T
Q  584 cacgct 589  Q
    ||||||    
T  29495072 cacgct 29495077  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 29494737 - 29494801
Alignment:
Q  248 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29494737 agagcactgatacccataccaccataggtggcataccactcataca-ccctcttgtgtggcacatt 29494801  T

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Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 384 - 586
Target Start/End: Original strand, 6607944 - 6608144
Alignment:
Q  384 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 483  Q
    |||||| |||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||||  |||||||     
T  6607944 ctgtagtagaggattgggcccatctctctctctcatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcgccgtcgtcgata 6608041  T
Q  484 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 583  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||| ||| ||||    
T  6608042 ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttcttttaactgtag 6608141  T
Q  584 cac 586  Q
    |||    
T  6608142 cac 6608144  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 384 - 586
Target Start/End: Complemental strand, 6626156 - 6625962
Alignment:
Q  384 ctgtagcagaggattggtctcatctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatc 483  Q
    |||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||      |||||     
T  6626156 ctgtagtagaggattgggcccatctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcgccgtcg------tcgata 6626065  T
Q  484 ttcgattctcccctttcacccgtcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtag 583  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||||||| ||||    
T  6626064 ttcgattctcccctttcacccatcgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtag 6625965  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 6626717 - 6626652
Alignment:
Q  248 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 313  Q
    ||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||    
T  6626717 agagcactgatacacatatctccatagctggcataccactcatacacccctcttgtgtagcacatt 6626652  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 6607504 - 6607564
Alignment:
Q  248 agagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 313  Q
    ||||||||||||| |||||| |||||| |||||||     |||||||||||||||||| |||||||    
T  6607504 agagcactgatacacatacctccatagctggcata-----catacacccctcttgtgtagcacatt 6607564  T

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Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 406 - 586
Target Start/End: Original strand, 19843237 - 19843415
Alignment:
Q  406 tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg 505  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  19843237 tctctctctcccatgccatttcccttttctcccaaccctagcacctcacg--agatttcaccgtcaccgtcgttgatcttcgattctcccctttcacccg 19843334  T
Q  506 tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcac 586  Q
     ||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |  |||||||||||| |||||||    
T  19843335 ccgctgattgaaattcattgtgtctccattattatctatttgtgctctctcttgtcggcggttttctttcaactgtagcac 19843415  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 19843075 - 19843144
Alignment:
Q  244 ttatagagcactgatacccataccaccataggtggcataccactcatacacccctcttgtgtggcacatt 313  Q
    ||||||||||||| ||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  19843075 ttatagagcactgttatacatacctccatagctggcataccactcatacacccctcttgtgtggcacatt 19843144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 406 - 586
Target Start/End: Complemental strand, 9793838 - 9793666
Alignment:
Q  406 tctctctctcccatgcgatttcccttttctcccaaccctagcacctctcgcgagatttcaccgtcgccaccgtcgatcttcgattctcccctttcacccg 505  Q
    |||||||| |||||||  ||||||||| ||||||||||||||||||   || ||||||||| |||       |||||| ||||| ||||||||||||| |    
T  9793838 tctctctcccccatgccctttccctttcctcccaaccctagcacctt--gcaagatttcactgtct------tcgatcatcgatcctcccctttcacctg 9793747  T
Q  506 tcgcagattgaaatccattgtgtctccattattatctatttgtgctctctcccgtcgccaattttctttcaaccgtagcac 586  Q
    |||| ||||||||||||| | |||||||||||| |   ||||||||||||| || |  |  ||||||||||||||||||||    
T  9793746 tcgctgattgaaatccatcgcgtctccattattcttcctttgtgctctctctcgccagcggttttctttcaaccgtagcac 9793666  T

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