View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12984_low_8 (Length: 440)
Name: NF12984_low_8
Description: NF12984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12984_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 6263240 - 6263000
Alignment:
| Q |
10 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatggatccgtcaactttaattttaattagn |
109 |
Q |
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| T |
6263240 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatggatctgtcaactttaattttaattagt |
6263141 |
T |
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| Q |
110 |
nnnnnnagatagataaaatgataatagtgatttgagcattcctccacttgtctggaggaatccgattttgagttccgatcacaatatccagcctaataat |
209 |
Q |
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| T |
6263140 |
ttttttagatagataaaatgacaatagtcatttgagcattcctccacttgtctggaggaatccaattttgagttccgatcactatatccagcctaataat |
6263041 |
T |
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| Q |
210 |
atagacatttttcccatatgaactaggagttgtggatgtca |
250 |
Q |
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| T |
6263040 |
atagacatttttcccatatgaactaggagttgtggatgtca |
6263000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 353 - 440
Target Start/End: Complemental strand, 6262897 - 6262810
Alignment:
| Q |
353 |
ctttccgtttggatttaaaacacttgaatcataatcgaaaggtctcatcggttcattgtctagtttggtttttagaatattgtttttc |
440 |
Q |
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| T |
6262897 |
ctttccgtttggatttaaaacacttgaatcataatcgaaaggtctcatcggttcattgtctagtttggtttttagaatattggttttc |
6262810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 6279463 - 6279371
Alignment:
| Q |
10 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatggatccgtcaactttaatttt |
102 |
Q |
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| T |
6279463 |
gcaaaagctcaaggagttgttgattctgcaaaggatgcaacaaacaggaactaattatgtttgatgaatcctgaatccgtcaatttttatttt |
6279371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 6252186 - 6252125
Alignment:
| Q |
360 |
tttggatttaaaacacttgaatcataatcgaaaggtctcatcggttcattgtctagtttggt |
421 |
Q |
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| T |
6252186 |
tttggatttaaaacacttgaatcaagatcgagagttctcaacggttcaatgcctagtttggt |
6252125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 6252480 - 6252412
Alignment:
| Q |
12 |
aaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatca |
80 |
Q |
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| T |
6252480 |
aaaggctcaaggagctgttgattctgcgaaggattctacaaacaagaactaattatgtttgatggatca |
6252412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 6258893 - 6258821
Alignment:
| Q |
10 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatg |
82 |
Q |
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| T |
6258893 |
gcaaaggcacaaggagctgttgattctgctaaggattctacaaacaagaactaattatgtttgatgaatcatg |
6258821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 6272321 - 6272275
Alignment:
| Q |
10 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaa |
56 |
Q |
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| T |
6272321 |
gcaaaggctcaaggagctgttgattctgtgaaggatgccacaaacaa |
6272275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 6233537 - 6233464
Alignment:
| Q |
9 |
agcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatg |
82 |
Q |
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| T |
6233537 |
agcaaaggctcaaggagctgttgattctacaaaggattctacaaacaagaactaattatgtttgatggatcatg |
6233464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 24469180 - 24469108
Alignment:
| Q |
10 |
gcaaaggcacaaggagttgttgattctgtgaaggatgcagcaaacaagagctaatcacgtttgatggatcatg |
82 |
Q |
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| T |
24469180 |
gcaaaggcgcaaggagctgttgattctgctaaggattctacaaacaagaactaattatgtttgatggatcatg |
24469108 |
T |
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