View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12985_high_1 (Length: 480)
Name: NF12985_high_1
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 6916474 - 6916929
Alignment:
| Q |
18 |
tgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916474 |
tgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagac |
6916573 |
T |
|
| Q |
118 |
ccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
6916574 |
ccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaag |
6916673 |
T |
|
| Q |
218 |
aattgtagttttggttcannnnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatg |
317 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916674 |
aattgtggttttggttcatttttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatg |
6916773 |
T |
|
| Q |
318 |
tttttattgggaaacttgatttaatattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatac |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916774 |
tttttattgggaaacttgatttaacattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatac |
6916873 |
T |
|
| Q |
418 |
attgttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6916874 |
attgttcagctagtttagatttttgttcacttatcaatgcacttctgactgtaaat |
6916929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 6890644 - 6890693
Alignment:
| Q |
422 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaa |
471 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||||| |||||||| |
|
|
| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgtaa |
6890693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
53 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
152 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
|
| Q |
153 |
ctgaatgat |
161 |
Q |
| |
|
||||||||| |
|
|
| T |
15035949 |
ctgaatgat |
15035941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University