View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_high_17 (Length: 218)
Name: NF12985_high_17
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 32747019 - 32746828
Alignment:
| Q |
11 |
gtgagatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccgagtacttga |
110 |
Q |
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| T |
32747019 |
gtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccaagtacttga |
32746920 |
T |
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| Q |
111 |
tttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttg |
202 |
Q |
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| T |
32746919 |
tttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttg |
32746828 |
T |
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Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 4914003 - 4913817
Alignment:
| Q |
16 |
atgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccgagtacttgatttat |
115 |
Q |
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||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
4914003 |
atgaagaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttat |
4913904 |
T |
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| Q |
116 |
cctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttgataccaactttg |
202 |
Q |
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| T |
4913903 |
cctcaaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatctatctctctttgataccaactttg |
4913817 |
T |
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