View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_high_4 (Length: 393)
Name: NF12985_high_4
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 56231597 - 56231225
Alignment:
| Q |
13 |
cagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgttttctggcaaagctatagaaag |
112 |
Q |
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| T |
56231597 |
cagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgttttctggcaaagctatagaaag |
56231498 |
T |
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| Q |
113 |
gctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaacttgac---ttggttaattaatggtatgtcacaagaagaa---aa |
206 |
Q |
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| T |
56231497 |
gctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaacttgacgacttggttaattaatggtatgtcaaaagaagaagaaaa |
56231398 |
T |
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| Q |
207 |
attggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgca |
306 |
Q |
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| T |
56231397 |
attggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgca |
56231298 |
T |
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| Q |
307 |
acatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactg |
379 |
Q |
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| T |
56231297 |
acatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactg |
56231225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 39189334 - 39188953
Alignment:
| Q |
13 |
cagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgttttctggcaaagctatagaaag |
112 |
Q |
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| T |
39189334 |
cagtatatacttacgcgttttcaaccggtgcttcagccaattttgcctcagcagcagtaatgagtggataaagcttgttttctggcaaagctgtagaaag |
39189235 |
T |
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| Q |
113 |
gctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaa---------aacttga----cttgg-ttaattaatggtatgtcacaa |
198 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||| || |||||||||||||||||| |
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| T |
39189234 |
gctagctccctgataatcaatcgataatggaaatattagagaagaaaatggaagtgatagaaaaaatgaaaaacttgactttattaatggtatgtcacaa |
39189135 |
T |
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| Q |
199 |
ga---agaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagcaacagttaata |
295 |
Q |
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| T |
39189134 |
gatgaagaaaaattggataataccttaaagtgttgtccattatggagttgaacaacagtatcaaactctctatctaaggtacttgcagcaacagttaata |
39189035 |
T |
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| Q |
296 |
tccaaggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaac |
377 |
Q |
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| T |
39189034 |
tccaaggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaac |
39188953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 31050907 - 31050980
Alignment:
| Q |
262 |
tctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcc |
335 |
Q |
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|||||||| || ||||| ||||||||||| || | |||||| |||||||| | |||| ||||||| |||||||| |
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| T |
31050907 |
tctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtcc |
31050980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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