View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12985_high_6 (Length: 360)

Name: NF12985_high_6
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12985_high_6
NF12985_high_6
[»] chr4 (4 HSPs)
chr4 (27-235)||(34841137-34841344)
chr4 (27-143)||(43277562-43277678)
chr4 (142-227)||(33189044-33189127)
chr4 (180-232)||(43277525-43277577)
[»] chr5 (2 HSPs)
chr5 (142-225)||(38761202-38761285)
chr5 (168-235)||(39888027-39888094)
[»] chr2 (1 HSPs)
chr2 (142-233)||(18601390-18601481)
[»] chr3 (2 HSPs)
chr3 (142-233)||(28885320-28885407)
chr3 (160-227)||(8319998-8320065)
[»] chr8 (2 HSPs)
chr8 (142-233)||(43039175-43039261)
chr8 (142-227)||(9990920-9991004)
[»] chr7 (3 HSPs)
chr7 (142-225)||(43637446-43637529)
chr7 (142-225)||(46459960-46460043)
chr7 (168-227)||(41988075-41988133)
[»] chr6 (1 HSPs)
chr6 (142-230)||(32818514-32818601)
[»] chr1 (1 HSPs)
chr1 (172-232)||(39936316-39936376)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 34841344 - 34841137
Alignment:
Q  27 catgaatgtgaaaatgaaaactattactagtgcttaggccatgtgtatttgagaaaatgttgtggtacagagataatagaaattgttattggtgaaaaac 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34841344 catgaatgtgaaaatggaaactattactagtgcttaggccatgtgtatttgagaaaatgttgtggtacagagataatagaaattgttattggtgaaaaac 34841245  T
Q  127 caaatgatatgttgtttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  34841244 caaatgatatgttgtttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggata-ttttgtcttttcaaaaa 34841146  T
Q  227 atagtagta 235  Q
    |||||||||    
T  34841145 atagtagta 34841137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 43277678 - 43277562
Alignment:
Q  27 catgaatgtgaaaatgaaaactattactagtgcttaggccatgtgtatttgagaaaatgttgtggtacagagataatagaaattgttattggtgaaaaac 126  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43277678 catgaatgtgaaaatggaaactattactagtgcttaggccatgtgtatttgagaaaatgttgtggtacagagataatagaaattgttattggtgaaaaac 43277579  T
Q  127 caaatgatatgttgttt 143  Q
    |||||||||||||||||    
T  43277578 caaatgatatgttgttt 43277562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 33189044 - 33189127
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaa 227  Q
    |||| |||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||  |||| ||||||||||||||||||||    
T  33189044 ttaagttaatttgtacaaaaa-caaattaattaataataaattatatgttgttt-tattcaaggatatttttgtcttttcaaaaaa 33189127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 43277577 - 43277525
Alignment:
Q  180 aaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagta 232  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  43277577 aaatgatatgttgtttctatttgaggatatttttgtcttttcaaaaaatagta 43277525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 38761202 - 38761285
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaa 225  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |  |||| ||||||||||||||||||    
T  38761202 ttaatttaatttttacaaaaaacaaattaatcaatcataaattatatgttgtttttactcaaggatatttttgtcttttcaaaa 38761285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 39888094 - 39888027
Alignment:
Q  168 ttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagtagta 235  Q
    ||||||||| |||||||||||||||||  || |  |||| ||||||||||||| ||||||||||||||    
T  39888094 ttaattaatgataaattatatgttgttgttagtcaaggatatttttgtcttttaaaaaaatagtagta 39888027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 18601481 - 18601390
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagtag 233  Q
    |||||||||| | ||||||||| || ||||||||||||||||||||||||| || ||||  |||| ||||||||||||| ||||||||||||    
T  18601481 ttaatttaatctttacaaaaaaaaaattaattaatcataaattatatgttgattttattgaaggatatttttgtcttttaaaaaaatagtag 18601390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 28885320 - 28885407
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagtag 233  Q
    ||||||||||||||| |||||| ||    ||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||||||    
T  28885320 ttaatttaatttgtaaaaaaaataa----attaatcataaattatatgttgtttttattaaaggatatttttgtcttttcaaaaaatagtag 28885407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 8320065 - 8319998
Alignment:
Q  160 aaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaa 227  Q
    ||||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  8320065 aaaacaaattaataaatcataaattatatgttgtttttatttaaggatatttttgtcttttcaaaaaa 8319998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 43039175 - 43039261
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagtag 233  Q
    ||||||||||||||| |||||     |||||||||||||||||||||||||||| ||||  |||| |||||| |||||||||||||||||||    
T  43039175 ttaatttaatttgtaaaaaaa-----ttaattaatcataaattatatgttgtttttattgaaggatatttttatcttttcaaaaaatagtag 43039261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 9991004 - 9990920
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaa 227  Q
    |||| ||||||||||||||||  || ||||| ||||||||||||||| |||||| ||||  |||| ||||||||||||| ||||||    
T  9991004 ttaagttaatttgtacaaaaataaa-ttaatcaatcataaattatatcttgtttttattcaaggatatttttgtctttttaaaaaa 9990920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 43637529 - 43637446
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaa 225  Q
    |||||||||||| ||||||||| || ||||| |||||||||||||||||||||| || |  |||| ||||||||||||||||||    
T  43637529 ttaatttaatttttacaaaaaataaattaatcaatcataaattatatgttgtttttactcaaggatatttttgtcttttcaaaa 43637446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 46459960 - 46460043
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaa 225  Q
    |||||||||||| || ||||||||| ||| | |||||||||||||||||||||| || |  |||||||||||||||||||||||    
T  46459960 ttaatttaatttttataaaaaacaaattagtcaatcataaattatatgttgtttttactcaaggacatttttgtcttttcaaaa 46460043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 41988133 - 41988075
Alignment:
Q  168 ttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaa 227  Q
    |||||||||||||||||||||||||||| |||||  ||| |||||||| |||||||||||    
T  41988133 ttaattaatcataaattatatgttgttt-tatttatggatatttttgttttttcaaaaaa 41988075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 32818514 - 32818601
Alignment:
Q  142 ttaatttaatttgtacaaaaaacaacttaattaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatag 230  Q
    |||||||||||| ||||||||  || ||||| |||||||||||||||||||||| || || |||| |||||||||||||||||| ||||    
T  32818514 ttaatttaatttttacaaaaataaa-ttaatcaatcataaattatatgttgtttttacttaaggaaatttttgtcttttcaaaatatag 32818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 39936376 - 39936316
Alignment:
Q  172 ttaatcataaattatatgttgtttctatttgaggacatttttgtcttttcaaaaaatagta 232  Q
    ||||||||||||||| |||||||| ||||  |||| |||||||||||||||||||||||||    
T  39936376 ttaatcataaattatctgttgtttttattgaaggatatttttgtcttttcaaaaaatagta 39936316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University