View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_10 (Length: 292)
Name: NF12985_low_10
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13064994 - 13065269
Alignment:
| Q |
1 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13064994 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccg |
13065093 |
T |
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| Q |
101 |
gagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
200 |
Q |
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| T |
13065094 |
gagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
13065193 |
T |
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| Q |
201 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtct |
279 |
Q |
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| T |
13065194 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtct |
13065269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13071748 - 13072023
Alignment:
| Q |
1 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13071748 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccg |
13071847 |
T |
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| Q |
101 |
gagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
200 |
Q |
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| T |
13071848 |
gagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
13071947 |
T |
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| Q |
201 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtct |
279 |
Q |
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| T |
13071948 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtct |
13072023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13075952 - 13076227
Alignment:
| Q |
1 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagataaaaactctatgctaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13075952 |
taccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatatgacattaaatgattgaatgttagattcaaactctatgctaccg |
13076051 |
T |
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| Q |
101 |
gagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
200 |
Q |
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| T |
13076052 |
gagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttctacatgaatgtgcctttccactttcttctcttctacctttgggat |
13076151 |
T |
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| Q |
201 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtct |
279 |
Q |
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| T |
13076152 |
ttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtct |
13076227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 13072708 - 13072806
Alignment:
| Q |
156 |
tacatgaatgtgcctttccactttcttc---tcttctacctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctttttgttc |
251 |
Q |
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|||||||||||| |||||||| | |||| |||||| ||||||| |||||||||| |||||||| |||| |||||||| |||| |||||| |||||| |
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| T |
13072708 |
tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttcttgttc |
13072806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 13076912 - 13077010
Alignment:
| Q |
156 |
tacatgaatgtgcctttccactttcttc---tcttctacctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctttttgttc |
251 |
Q |
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|||||||||||| |||||||| | |||| |||||| ||||||| |||||||||| |||||||| |||| |||||||| |||| |||||| |||||| |
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| T |
13076912 |
tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttcttgttc |
13077010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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