View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_11 (Length: 287)
Name: NF12985_low_11
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 31127763 - 31127515
Alignment:
| Q |
21 |
ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcag |
120 |
Q |
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| T |
31127763 |
ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcag |
31127664 |
T |
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| Q |
121 |
cccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127663 |
cccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtc |
31127564 |
T |
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| Q |
221 |
gtcagaagccgcttccttaccatccacgggaaccggaggatacagtctc |
269 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127563 |
gtcacaagccgcttccttaccatccacgggaaccggaggatacagtctc |
31127515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 31078445 - 31078249
Alignment:
| Q |
21 |
ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcag |
120 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |||||||| ||||| ||||||||||||| |
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| T |
31078445 |
ggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcag |
31078346 |
T |
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| Q |
121 |
cccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaac |
217 |
Q |
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| T |
31078345 |
cccaatcaagtccccatattttctccgaccttcccatagcatatatatgatacgccactctccaccctttcttcacaaaagttccatctggcaaaac |
31078249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 31132471 - 31132245
Alignment:
| Q |
21 |
ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatctctcaggtcgaaactcag |
120 |
Q |
| |
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|||||||| ||||||| || |||| |||||||||||||||||| ||||||||| |||||||| ||| || | |||||||| |||||||||| |||||||| |
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| T |
31132471 |
ggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcag |
31132372 |
T |
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| Q |
121 |
cccaatcgggtccccatattttctcggaccttcccatagcatatatatgatatgtcaccctccaccctttcttcactaaagttccatccggcaaaacgtc |
220 |
Q |
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||||||||| ||||||||||||||| |||||||||||| |||||| |||||| | || ||||||||||||||||||| |||||||| |||||||| || |
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| T |
31132371 |
cccaatcggatccccatattttctcagaccttcccataacatatacatgatacgcaactatccaccctttcttcactaatgttccatctggcaaaacatc |
31132272 |
T |
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| Q |
221 |
gtcagaagccgcttccttaccatccac |
247 |
Q |
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|| | || ||||||||| ||||||| |
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| T |
31132271 |
atcgtaggctgcttccttagcatccac |
31132245 |
T |
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