View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_12 (Length: 274)
Name: NF12985_low_12
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 31245376 - 31245522
Alignment:
| Q |
14 |
agacttcgaatttcagccggggaaagaccagttggtggtggtctgaaggtattattagcttcatgccactcttctttcatttcaacttcaactatatcag |
113 |
Q |
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| T |
31245376 |
agacttcgaatttcagccggggaaagaccagttggtggtggtctgaaggtattattagcttcatgccactcttctttcatttcaactttaactatatcag |
31245475 |
T |
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| Q |
114 |
ctacattattagcaatggatccacagatttcacaagttctgtaaatt |
160 |
Q |
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| T |
31245476 |
ctacattattagcaatggatccacagatttcacaagttctgtaaatt |
31245522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 31219908 - 31220006
Alignment:
| Q |
67 |
attagcttcatgccactcttctttcatttcaacttcaactatatcagctacattattagcaatggatccacagatttcacaagttctgtaaattgtaca |
165 |
Q |
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| T |
31219908 |
attagcttcactccactgttctgtcatttcaacttcaactataccagatacatttctagcaatggatccacagatttcacaagttctgtaaattgtaca |
31220006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 31245520 - 31245570
Alignment:
| Q |
207 |
attttaataacaaaaatttaaacacatgtaatccaattagaagtattaact |
257 |
Q |
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| T |
31245520 |
attttaataacaaaaatttaaacacatgtaatccaattagaagtattaact |
31245570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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