View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_16 (Length: 243)
Name: NF12985_low_16
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13064986 - 13064851
Alignment:
| Q |
1 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaag |
100 |
Q |
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| T |
13064986 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaag |
13064887 |
T |
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| Q |
101 |
gtttcaagttcaacaagtactcaacaatttgaagtt |
136 |
Q |
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| T |
13064886 |
gtttcaagctcaacaagtactcaacaatttgaagtt |
13064851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13071740 - 13071605
Alignment:
| Q |
1 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13071740 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaag |
13071641 |
T |
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| Q |
101 |
gtttcaagttcaacaagtactcaacaatttgaagtt |
136 |
Q |
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| T |
13071640 |
gtttcaagctcaacaagtactcaacaatttgaagtt |
13071605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13075944 - 13075809
Alignment:
| Q |
1 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtagcagatgttcaagaatccaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13075944 |
aaactttggcgtatcaaagaatcctgcacgaacagaacctttttattccatggagggcactacaacactagaagcagtggcagatgttcaagaatccaag |
13075845 |
T |
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| Q |
101 |
gtttcaagttcaacaagtactcaacaatttgaagtt |
136 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
13075844 |
gtttcaagctcaacaagtactcaacaatttgaagtt |
13075809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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