View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_17 (Length: 241)
Name: NF12985_low_17
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 54734146 - 54734254
Alignment:
| Q |
111 |
tgtgagttgaaagtaatttacaccgaataatatcaacattttctgtagcattaccactcttttttctttggtcgaatcaacatcaccactctaacaaaga |
210 |
Q |
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| T |
54734146 |
tgtgagttgaaagtaatttacaccgaataatatcaacattttctgtagcattaccactcttttttctttggtcgaatcaacatcaccactctaacaaaga |
54734245 |
T |
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| Q |
211 |
aacacgata |
219 |
Q |
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| T |
54734246 |
aacacgata |
54734254 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 54733982 - 54734052
Alignment:
| Q |
1 |
ccctctttgatgagcttcaattcaacagttaaa--tggctcaatccaccttcctctatgattgaaaattaa |
69 |
Q |
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| T |
54733982 |
ccctctttgatgagcttcaattcaacagttaaaaatggctcaatccaccttcctctatgattgaaaattaa |
54734052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 54734098 - 54734127
Alignment:
| Q |
63 |
aaattaaaattataagttagcataggaatg |
92 |
Q |
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| T |
54734098 |
aaattaaaattataagttagcataggaatg |
54734127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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