View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_2 (Length: 423)
Name: NF12985_low_2
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 10985182 - 10985360
Alignment:
| Q |
18 |
aagctcataatgtatcatccatctttttggatcaatctttctctaaaatatgtttgagacttccaattgtcaactcgtttaaagttgttatggtgtaacc |
117 |
Q |
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| T |
10985182 |
aagctcataatgtatcatccgtctttttggatcaatctttctctaaaatatgtttgagacttccaattgtcaactcgtttcaagttgttatggtgtaacc |
10985281 |
T |
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| Q |
118 |
accttatgcttcacattgtattttgcaagaacactctccaatattgattacataaatgttttcgtttgtcacttatcaa |
196 |
Q |
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| T |
10985282 |
atcttatgcttcacattgtattttgcaagaacactctccaatattgattacataaatgttttcgtttgtcactgatcaa |
10985360 |
T |
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Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 209 - 416
Target Start/End: Original strand, 10990407 - 10990630
Alignment:
| Q |
209 |
tatagcttcaatttattaggtgacgtaaaggttagaaaaagatgaagggaaaggtcccatgaaatcagtaccccgacaa----------------ccaaa |
292 |
Q |
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| T |
10990407 |
tatagcttcaatttattaggtgacataaaggttagaaaaagatgaagggaaaggtcccatgaaatcagtaccccgacaaccaaaagttccaatttccaaa |
10990506 |
T |
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| Q |
293 |
atttcgtgtaggggcatctcannnnnnnnagcaatactgcttgttgatcaattttatctccatttgtaatggcctccatacgaagtactatggcaatgtt |
392 |
Q |
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| T |
10990507 |
atttcgtgtaggagcatctcattttttttagcaataccgcatgttgatcagttttatctccatttgtaatggcctccatatgaagaactatggaaatgtt |
10990606 |
T |
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| Q |
393 |
acatgatgtccctttattcttttc |
416 |
Q |
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| T |
10990607 |
agatgatgtccctttattcttttc |
10990630 |
T |
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