View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12985_low_7 (Length: 354)
Name: NF12985_low_7
Description: NF12985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12985_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 47116919 - 47116595
Alignment:
| Q |
1 |
agatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagat |
100 |
Q |
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| T |
47116919 |
agatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagat |
47116820 |
T |
|
| Q |
101 |
atcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattga |
200 |
Q |
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| T |
47116819 |
atcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattga |
47116720 |
T |
|
| Q |
201 |
atgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctcttt |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116719 |
atgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctcttt |
47116620 |
T |
|
| Q |
301 |
ccttaccagttttccaccaaataat |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
47116619 |
ccttaccagttttccaccaaataat |
47116595 |
T |
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