View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12986_high_11 (Length: 338)
Name: NF12986_high_11
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12986_high_11 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: scaffold0769 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 5411 - 5742
Alignment:
| Q |
1 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5411 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcactt |
5510 |
T |
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| Q |
101 |
ttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaag |
200 |
Q |
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| T |
5511 |
ttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaag |
5610 |
T |
|
| Q |
201 |
aatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5611 |
aatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacacc |
5710 |
T |
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| Q |
301 |
tccaatcatttgtctttgagtctctctgctgc |
332 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
5711 |
tccaatcatttgtctttgagtctctttgctgc |
5742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 34634503 - 34634172
Alignment:
| Q |
1 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34634503 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcactt |
34634404 |
T |
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| Q |
101 |
ttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34634403 |
ttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaag |
34634304 |
T |
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| Q |
201 |
aatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacacc |
300 |
Q |
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| T |
34634303 |
aatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacacc |
34634204 |
T |
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| Q |
301 |
tccaatcatttgtctttgagtctctctgctgc |
332 |
Q |
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| T |
34634203 |
tccaatcatttgtctttgagtctctttgctgc |
34634172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 34641482 - 34641317
Alignment:
| Q |
1 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaattt----gcatagatggttacaaactc |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| || |
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| T |
34641482 |
caaggcatgctcataattactgatattagattgatacttgagagttataactttctcaagtgtttagtatcaatttaattgcatagatggttacaaaatc |
34641383 |
T |
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| Q |
97 |
acttttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgat |
162 |
Q |
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|||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34641382 |
acttttcaattttaatttgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgat |
34641317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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