View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12986_high_14 (Length: 325)
Name: NF12986_high_14
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12986_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 181280 - 180976
Alignment:
| Q |
20 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
119 |
Q |
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| T |
181280 |
gacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgat |
181181 |
T |
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| Q |
120 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
219 |
Q |
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| T |
181180 |
attgagacatataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
181081 |
T |
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| Q |
220 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
319 |
Q |
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| T |
181080 |
caattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
180981 |
T |
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| Q |
320 |
atatt |
324 |
Q |
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| T |
180980 |
atatt |
180976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 1701707 - 1701402
Alignment:
| Q |
20 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
119 |
Q |
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| T |
1701707 |
gacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgat |
1701608 |
T |
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| Q |
120 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
219 |
Q |
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| T |
1701607 |
attgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtg |
1701508 |
T |
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| Q |
220 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
319 |
Q |
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| T |
1701507 |
aaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
1701408 |
T |
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| Q |
320 |
atattg |
325 |
Q |
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| T |
1701407 |
gtattg |
1701402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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