View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12986_high_18 (Length: 311)

Name: NF12986_high_18
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12986_high_18
NF12986_high_18
[»] chr1 (1 HSPs)
chr1 (27-311)||(6639564-6639848)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 27 - 311
Target Start/End: Complemental strand, 6639848 - 6639564
Alignment:
Q  27 aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaa-gataaagaatatgtagta 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6639848 aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaaagataaagaatatgtagta 6639749  T
Q  126 cnnnnnnngggaatgacggtaagcacggaaattcaattattttgtaagnnnnnnncatatccaaaatagtgaaaattagattttgcgcaaatctacttga 225  Q
    |       ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  6639748 caaaaaaagggaatgacggtaagcacggaaattcaattattttgtaagaaaaaaacatatccaaaatagtgaaaattagattttgcgcaaatctacttga 6639649  T
Q  226 tcgaagatggaccaacgagagatgtgtgtctccatttttgcttggtctacgatgttaataattaaggtgagattgtaagaaaatta 311  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6639648 tcgaagatggaccaacgagagatgtgtttctccatttttgcttggtctacgatg-taataattaaggtgagattgtaagaaaatta 6639564  T

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