View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12986_high_6 (Length: 352)
Name: NF12986_high_6
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12986_high_6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 44314848 - 44314507
Alignment:
| Q |
11 |
cacagaaagcaactgaattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaac |
110 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44314848 |
cacagaaagcaactgaattcaatttaacaaaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaataagcaaaa |
44314749 |
T |
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| Q |
111 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314748 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatac |
44314649 |
T |
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| Q |
211 |
attatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagccactgaaatcagattggtccttatattaggc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44314648 |
attatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagccactgaaaccagattggtccttatattaggc |
44314549 |
T |
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| Q |
311 |
acatgtaagacatcacttagagccaaggtctttcctgatgtg |
352 |
Q |
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| T |
44314548 |
acatgtaagacatcacttagagccaaggtctttcctgatgtg |
44314507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 34098044 - 34098385
Alignment:
| Q |
11 |
cacagaaagcaactgaattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaac |
110 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34098044 |
cacagaaagcaactgaattcaatttaacaaaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaataagcaaaa |
34098143 |
T |
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| Q |
111 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098144 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatac |
34098243 |
T |
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| Q |
211 |
attatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagccactgaaatcagattggtccttatattaggc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34098244 |
attatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagccactgaaaccagattggtccttatattaggc |
34098343 |
T |
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| Q |
311 |
acatgtaagacatcacttagagccaaggtctttcctgatgtg |
352 |
Q |
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| T |
34098344 |
acatgtaagacatcacttagagccaaggtctttcctgatgtg |
34098385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 26 - 352
Target Start/End: Original strand, 39739 - 40065
Alignment:
| Q |
26 |
aattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaacgaaaatctgatccct |
125 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| || |||||| |
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| T |
39739 |
aattcaatttaatagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgacatactaataagcaaaagaaaacctaatccct |
39838 |
T |
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| Q |
126 |
ctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcat |
225 |
Q |
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| T |
39839 |
ctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcat |
39938 |
T |
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| Q |
226 |
tacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagccactgaaatcagattggtccttatattaggcacatgtaagacatca |
325 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39939 |
tacaatcttgttagactcaaatgacactttaatcccacccttgctcaaacgagccactgaaattagattggtccttatattaggcacatgtaagacatca |
40038 |
T |
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| Q |
326 |
cttagagccaaggtctttcctgatgtg |
352 |
Q |
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|||| ||||||||||||| |||||||| |
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| T |
40039 |
cttaaagccaaggtcttttctgatgtg |
40065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 19430397 - 19430289
Alignment:
| Q |
154 |
ttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacact |
253 |
Q |
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||||| ||| ||||||||||| || || | ||| |||| ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
19430397 |
ttcagaaatattaagtacaaagagtccttgatcaaaatagccttttcccacaaatttatttttctttgtcattacaatcttgtcagattcaaatgacaca |
19430298 |
T |
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| Q |
254 |
ttaatccca |
262 |
Q |
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|||| |||| |
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| T |
19430297 |
ttaacccca |
19430289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 41397476 - 41397517
Alignment:
| Q |
218 |
tttgtcattacaatcttgtcagattcaaatgacactttaatc |
259 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||| |
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| T |
41397476 |
tttgtcgttacaatcttgtcagatttaaatgacactttaatc |
41397517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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