View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12986_low_1 (Length: 655)

Name: NF12986_low_1
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12986_low_1
NF12986_low_1
[»] chr2 (8 HSPs)
chr2 (1-192)||(37783927-37784118)
chr2 (476-632)||(40330185-40330340)
chr2 (477-632)||(35133205-35133360)
chr2 (237-397)||(37783737-37783893)
chr2 (476-631)||(41985460-41985615)
chr2 (476-632)||(3777035-3777191)
chr2 (476-632)||(19267421-19267577)
chr2 (451-479)||(37783657-37783685)
[»] chr7 (1 HSPs)
chr7 (476-630)||(22901975-22902129)
[»] scaffold0036 (1 HSPs)
scaffold0036 (483-631)||(79671-79819)
[»] scaffold1892 (1 HSPs)
scaffold1892 (571-631)||(384-444)
[»] chr8 (3 HSPs)
chr8 (529-631)||(8622603-8622705)
chr8 (564-610)||(14762017-14762063)
chr8 (556-610)||(26975537-26975591)
[»] chr1 (1 HSPs)
chr1 (509-631)||(28562140-28562262)
[»] chr3 (3 HSPs)
chr3 (543-631)||(47395580-47395668)
chr3 (531-607)||(11752080-11752156)
chr3 (571-632)||(22495070-22495130)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 37784118 - 37783927
Alignment:
Q  1 gtgtttgttatttagtcaaaagtgggtgcaatttgctctaagtaatttgtctaagagaaaagtcatcaaatattagaaaaacaaacaggagtcgcaatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784118 gtgtttgttatttagtcaaaagtgggtgcaatttgctctaagtaatgtgtctaagagaaaagtcatcaaatattagaaaaacaaacaggagtcgcaatcg 37784019  T
Q  101 aagaaaaagcttcgcatgggtgatgcgaaagttccttggaatagttgctttagaagttctttatttgccacgttttcttccatcaagtataa 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784018 aagaaaaagcttcgcatgggtgatgcgaaacttccttggaatagttgctttagaagttctttatttgccacgttttcttccatcaagtataa 37783927  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 476 - 632
Target Start/End: Original strand, 40330185 - 40330340
Alignment:
Q  476 cattcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcac 575  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40330185 cattcagctccttac-gtgcacgcctccacttaccatgcctatgctgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcat 40330283  T
Q  576 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccact 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40330284 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcgatgccact 40330340  T

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Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 477 - 632
Target Start/End: Complemental strand, 35133360 - 35133205
Alignment:
Q  477 attcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcacc 576  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |    
T  35133360 attcagctccttactgtgcacgcctccacttaccatacctatgttgtgttgcttcaagatatcagagatctcttgtcctcaaggaatttcaccattcatc 35133261  T
Q  577 attgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccact 632  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  35133260 attgtctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgccact 35133205  T

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Target: chr2; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 37783893 - 37783737
Alignment:
Q  237 tatatattgtttggcatagcctctccctttaacgatgagaggggcccaaaataagataggccaaacaccctgtatgtattagtgtgtgtggggatgttgt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||| ||||||    
T  37783893 tatatattgtttggcatagcctctccctttaacgatgagaggggcccaaaataagataggccaaacaccctgtatc----agtgtgtgtgggggtgttgt 37783798  T
Q  337 tctcctatagagaataattgaatgagacagtgatattgtaccaatttcttctcttatttta 397  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37783797 tctcttatagagaataattgaatgagacagtgacattgtaccaatttcttctcttatttta 37783737  T

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Target: chr2; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 476 - 631
Target Start/End: Original strand, 41985460 - 41985615
Alignment:
Q  476 cattcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcac 575  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||     
T  41985460 cattcagctccttattgtgcacgcctccacttaccatgcctatgctctgttactttaagatatcagagatcttttgtcctcaaggaatttcaccgttcat 41985559  T
Q  576 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccac 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41985560 cattgtctaagagaaggaaaccagtgtgctgattttttagctaagctcagtgccac 41985615  T

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Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 476 - 632
Target Start/End: Complemental strand, 3777191 - 3777035
Alignment:
Q  476 cattcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcac 575  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||     
T  3777191 cattcagctccttactgtgcatgccatcacttaccatgcctatgctgtgttgcttcaagacatcagagatctcttgtcctcaaggaatttcaccgttcat 3777092  T
Q  576 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccact 632  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  3777091 cattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgccact 3777035  T

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Target: chr2; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 476 - 632
Target Start/End: Original strand, 19267421 - 19267577
Alignment:
Q  476 cattcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcac 575  Q
    |||||||||||| ||| |||| |||  ||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||     
T  19267421 cattcagctcctcactatgcatgccatcacttaccatgcctatgctgtgttgcttcaagacatcaaagatctcttgtcctcaaggaatttcaccgttcat 19267520  T
Q  576 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccact 632  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  19267521 cattgcctaagagaaggaaaccagtgtgctgattttttagctaaactcggtgccact 19267577  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 479
Target Start/End: Complemental strand, 37783685 - 37783657
Alignment:
Q  451 gattatccgcgtcaaatagaacatgcatt 479  Q
    |||||||||||||||||||||||||||||    
T  37783685 gattatccgcgtcaaatagaacatgcatt 37783657  T

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Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 476 - 630
Target Start/End: Complemental strand, 22902129 - 22901975
Alignment:
Q  476 cattcagctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcac 575  Q
    |||||||||||| |||| ||| ||||||| ||||||  |||||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||     
T  22902129 cattcagctcctcactgagcatgcctccatttaccacacctatgctgttttaattcaagatatcaaagatctcttgtcttcaaggaatttcaccgttcat 22902030  T
Q  576 cattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgcca 630  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22902029 cattgtctaagagaaggaaaccattgtgctgattttttagctaagctcggtgcca 22901975  T

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Target: scaffold0036 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 483 - 631
Target Start/End: Original strand, 79671 - 79819
Alignment:
Q  483 ctccttactgtgcacgcctccacttaccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcaccattgtc 582  Q
    ||||||| || ||| |||||||  || || ||||||| ||| ||| ||||||||||||  |||||||| ||| |||||||||   || | | |||||| |    
T  79671 ctccttaatgagcatgcctccatctatcacgcctatgctgtattaattcaagatatcaaggatctcttatccacaaggaattcatccatcctccattggc 79770  T
Q  583 taagagaaggaaaccaatgtgctgattttttagctaagctcggtgccac 631  Q
    | |||||||| |||||||||||||||||| |||||||||||||||||||    
T  79771 tcagagaagggaaccaatgtgctgattttctagctaagctcggtgccac 79819  T

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Target: scaffold1892 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 571 - 631
Target Start/End: Complemental strand, 444 - 384
Alignment:
Q  571 ttcaccattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccac 631  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  444 ttcaccattgtctcagagaagggaaccaatgggctgattttttagctaaactctgtgccac 384  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 631
Target Start/End: Original strand, 8622603 - 8622705
Alignment:
Q  529 ttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcaccattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgc 628  Q
    |||||||||| | ||||||||||||  ||||||||||| || ||||| |||| || |||||||  || |||||||| ||| ||||||| || ||||||||    
T  8622603 ttcaagatattaaagatctcttgtcaacaaggaatttctccattcactattgcctcagagaagagaatcaatgtgcagatcttttagccaaactcggtgc 8622702  T
Q  629 cac 631  Q
    |||    
T  8622703 cac 8622705  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 564 - 610
Target Start/End: Original strand, 14762017 - 14762063
Alignment:
Q  564 ttcaccgttcaccattgtctaagagaaggaaaccaatgtgctgattt 610  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||    
T  14762017 ttcaccattcaccattgtctaagagaagggaaccaatgtgcagattt 14762063  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 610
Target Start/End: Original strand, 26975537 - 26975591
Alignment:
Q  556 caaggaatttcaccgttcaccattgtctaagagaaggaaaccaatgtgctgattt 610  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  26975537 caagaaatttcaccattcaccattgcctaagagaagggaaccaatgtgcagattt 26975591  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 631
Target Start/End: Complemental strand, 28562262 - 28562140
Alignment:
Q  509 ccatgcctatgttgtgttacttcaagatatcagagatctcttgtcctcaaggaatttcaccgttcaccattgtctaagagaaggaaaccaatgtgctgat 608  Q
    |||||||||||||||  || ||||||| |||| ||| ||||| ||  |||| |||||| || | || ||||||||||||||||| ||||||||||| |||    
T  28562262 ccatgcctatgttgttctaattcaagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagggaaccaatgtgccgat 28562163  T
Q  609 tttttagctaagctcggtgccac 631  Q
    || || || ||||| || |||||    
T  28562162 ttatttgcaaagctaggagccac 28562140  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 631
Target Start/End: Complemental strand, 47395668 - 47395580
Alignment:
Q  543 gatctcttgtcctcaaggaatttcaccgttcaccattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccac 631  Q
    |||||||| ||| |||| |||||| ||||| | || ||||| |||||||| || |||||||| || ||||||||||||||||| |||||    
T  47395668 gatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactttttagctaagctcggagccac 47395580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 11752080 - 11752156
Alignment:
Q  531 caagatatcagagatctcttgtcctcaaggaatttcaccgttcaccattgtctaagagaaggaaaccaatgtgctga 607  Q
    |||||||| | ||||||||||||| |||| |||||| |  |||| |||||||  ||||||||||| |||||||||||    
T  11752080 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtccgagagaaggaaatcaatgtgctga 11752156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 22495070 - 22495130
Alignment:
Q  571 ttcaccattgtctaagagaaggaaaccaatgtgctgattttttagctaagctcggtgccact 632  Q
    ||||||||||| | |||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  22495070 ttcaccattgtatcagagaagggaac-aatgtacagattttttagctaaactcggtgccact 22495130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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