View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12986_low_2 (Length: 247)

Name: NF12986_low_2
Description: NF12986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12986_low_2
NF12986_low_2
[»] chr7 (9 HSPs)
chr7 (1-241)||(47482421-47482661)
chr7 (1-233)||(48623863-48624095)
chr7 (40-220)||(13319773-13319955)
chr7 (38-220)||(3048205-3048389)
chr7 (10-130)||(7286041-7286160)
chr7 (26-154)||(25122770-25122898)
chr7 (11-82)||(14252908-14252979)
chr7 (63-150)||(9641498-9641586)
chr7 (10-154)||(28388887-28389033)
[»] scaffold0833 (1 HSPs)
scaffold0833 (3-241)||(1608-1846)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-241)||(42214-42454)
[»] chr8 (12 HSPs)
chr8 (11-241)||(18617420-18617650)
chr8 (38-220)||(21495811-21495995)
chr8 (48-220)||(22884937-22885111)
chr8 (11-154)||(41508666-41508809)
chr8 (11-82)||(18610785-18610856)
chr8 (63-154)||(45476020-45476112)
chr8 (86-150)||(20708244-20708308)
chr8 (63-154)||(21233662-21233754)
chr8 (62-140)||(16000622-16000701)
chr8 (38-82)||(16041137-16041182)
chr8 (38-82)||(16042813-16042858)
chr8 (86-150)||(18263068-18263132)
[»] chr5 (8 HSPs)
chr5 (3-237)||(7527577-7527811)
chr5 (3-220)||(17908154-17908371)
chr5 (44-220)||(32949584-32949762)
chr5 (3-165)||(23985866-23986028)
chr5 (11-154)||(2030372-2030515)
chr5 (11-130)||(25003444-25003563)
chr5 (11-82)||(34937976-34938047)
chr5 (53-150)||(23236028-23236126)
[»] chr2 (9 HSPs)
chr2 (6-220)||(22254777-22254992)
chr2 (4-241)||(28032576-28032812)
chr2 (3-241)||(17203001-17203239)
chr2 (71-220)||(25254853-25255003)
chr2 (48-220)||(23779437-23779612)
chr2 (10-184)||(32464398-32464571)
chr2 (63-171)||(16294374-16294483)
chr2 (11-82)||(42179974-42180045)
chr2 (11-61)||(7513621-7513671)
[»] scaffold0335 (1 HSPs)
scaffold0335 (4-220)||(9613-9829)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-220)||(29950-30171)
[»] chr3 (13 HSPs)
chr3 (1-219)||(9304211-9304431)
chr3 (2-220)||(12903344-12903564)
chr3 (38-220)||(14283783-14283967)
chr3 (38-220)||(23887690-23887874)
chr3 (38-220)||(38166524-38166708)
chr3 (38-220)||(11987669-11987853)
chr3 (38-220)||(17936719-17936904)
chr3 (48-220)||(11480593-11480767)
chr3 (11-154)||(51962704-51962847)
chr3 (3-130)||(18738353-18738482)
chr3 (11-82)||(54040152-54040223)
chr3 (11-82)||(54049439-54049510)
chr3 (86-154)||(11636956-11637024)
[»] chr6 (10 HSPs)
chr6 (3-220)||(16301576-16301790)
chr6 (38-220)||(32278121-32278305)
chr6 (38-220)||(29664692-29664876)
chr6 (11-176)||(14150999-14151165)
chr6 (11-172)||(27739537-27739701)
chr6 (11-82)||(19627855-19627926)
chr6 (63-150)||(19670935-19671023)
chr6 (63-154)||(31469169-31469261)
chr6 (63-127)||(26523725-26523790)
chr6 (11-59)||(35010882-35010930)
[»] scaffold0615 (1 HSPs)
scaffold0615 (1-220)||(7559-7780)
[»] scaffold0207 (1 HSPs)
scaffold0207 (38-218)||(16426-16608)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-171)||(165940-166107)
[»] scaffold0342 (1 HSPs)
scaffold0342 (46-220)||(2181-2357)
[»] scaffold0029 (1 HSPs)
scaffold0029 (48-220)||(67194-67368)
[»] scaffold0066 (2 HSPs)
scaffold0066 (38-210)||(44551-44725)
scaffold0066 (38-210)||(52747-52921)
[»] scaffold0032 (1 HSPs)
scaffold0032 (48-220)||(14959-15133)
[»] chr4 (12 HSPs)
chr4 (48-220)||(9793801-9793975)
chr4 (44-212)||(22736983-22737151)
chr4 (38-220)||(32462036-32462220)
chr4 (38-220)||(23271679-23271863)
chr4 (38-220)||(8043493-8043678)
chr4 (10-130)||(55378347-55378466)
chr4 (38-167)||(14503087-14503219)
chr4 (11-82)||(19699178-19699249)
chr4 (11-82)||(19709763-19709834)
chr4 (63-150)||(13595659-13595747)
chr4 (10-150)||(13448616-13448758)
chr4 (14-80)||(7848885-7848951)
[»] scaffold0162 (2 HSPs)
scaffold0162 (38-198)||(17721-17882)
scaffold0162 (11-154)||(9574-9717)
[»] scaffold0173 (1 HSPs)
scaffold0173 (48-220)||(3921-4094)
[»] scaffold1486 (1 HSPs)
scaffold1486 (48-210)||(1422-1586)
[»] scaffold0132 (1 HSPs)
scaffold0132 (11-154)||(12352-12495)
[»] scaffold0023 (1 HSPs)
scaffold0023 (48-210)||(58042-58206)
[»] scaffold1666 (1 HSPs)
scaffold1666 (63-220)||(1100-1259)
[»] scaffold0686 (2 HSPs)
scaffold0686 (11-154)||(28-171)
scaffold0686 (11-144)||(7508-7640)
[»] scaffold0012 (1 HSPs)
scaffold0012 (38-212)||(35325-35499)
[»] scaffold0016 (1 HSPs)
scaffold0016 (11-144)||(167711-167843)
[»] scaffold0892 (1 HSPs)
scaffold0892 (4-74)||(2426-2496)
[»] scaffold0191 (1 HSPs)
scaffold0191 (2-82)||(250-331)
[»] scaffold0138 (3 HSPs)
scaffold0138 (10-82)||(26831-26903)
scaffold0138 (11-82)||(27846-27917)
scaffold0138 (11-82)||(39842-39913)
[»] scaffold0158 (1 HSPs)
scaffold0158 (11-82)||(23393-23464)
[»] chr1 (2 HSPs)
chr1 (11-82)||(20252723-20252794)
chr1 (66-181)||(18164597-18164712)
[»] scaffold0561 (1 HSPs)
scaffold0561 (53-171)||(4386-4505)
[»] scaffold0165 (2 HSPs)
scaffold0165 (86-154)||(28553-28621)
scaffold0165 (63-154)||(20569-20661)
[»] scaffold0009 (1 HSPs)
scaffold0009 (10-130)||(98562-98683)
[»] scaffold0258 (1 HSPs)
scaffold0258 (65-127)||(8740-8803)
[»] scaffold0020 (1 HSPs)
scaffold0020 (10-154)||(104398-104542)
[»] scaffold0133 (1 HSPs)
scaffold0133 (10-150)||(3285-3427)
[»] scaffold0148 (1 HSPs)
scaffold0148 (86-150)||(36352-36416)
[»] scaffold0118 (1 HSPs)
scaffold0118 (38-81)||(35750-35794)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 47482421 - 47482661
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcata 100  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47482421 ttttggtgatgattatgatgttctatcggcatcatgggcgacaacctaaatattggtgagatcggtaccgcatgtatatagagttgtgtctaggatcata 47482520  T
Q  101 tcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47482521 tcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattagtggtgatgtttgtatttgatgaattgtggtgtcatg 47482620  T
Q  201 ttatgattaattttgtgaatgacgaatattgatgatgatgt 241  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  47482621 ttatgattaatttcgtgaatgatgaatattgatgatgatgt 47482661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 48623863 - 48624095
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcata 100  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||  |||||||||||||||||||| | ||||||||||||||    
T  48623863 ttttggtgatgattatgatgttctatcggcatcatgggcgacggcctaattattagtgagaatggtaccgcatgcatatagagatatgtctaggatcata 48623962  T
Q  101 tcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  48623963 tcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaacggtgatgtttgtatttgatgaattgttgtgtcatg 48624062  T
Q  201 ttatgattaattttgtgaatgacgaatattgat 233  Q
    |||||||||||||||||||||| ||||||||||    
T  48624063 ttatgattaattttgtgaatgatgaatattgat 48624095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 13319955 - 13319773
Alignment:
Q  40 gacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattactt 137  Q
    |||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  13319955 gacagcctaaatattggtgatgatcggtaccacatgcatatatatgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattactt 13319856  T
Q  138 gatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||| | |||||||    
T  13319855 gatgtacttgtggttgtaagtgattaatggtgatatttgtatttgatggattgtcgtgtcatgtcatgattaactatgtgaat 13319773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 3048389 - 3048205
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| ||   |||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  3048389 gcgacggcctaaatattggtgatgacatgtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 3048290  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||    
T  3048289 ttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtatcatgttatgattaattatgtgaat 3048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 7286041 - 7286160
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg-ttg 108  Q
    ||||||||||||||||||||||||| | ||||| |||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| |||    
T  7286041 tgattatgatgttctatcggcatcagg-gcgacggcctaa-tattggtgtgaccgataccgcatgcatatagagttgtgtctaggatcatatcatgattg 7286138  T
Q  109 tggcatgagtcctagttgtgaa 130  Q
    ||||||||||||||||||||||    
T  7286139 tggcatgagtcctagttgtgaa 7286160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 25122898 - 25122770
Alignment:
Q  26 tcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtggcatgagtcctagtt 125  Q
    ||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  25122898 tcggcatcaagggcgacggcctaaatattggtgagaccggtaccgcatgcatatagggt-gtgtctaggatcatatcatgttgtggcatgagtcgtagtt 25122800  T
Q  126 gtgaaattacttgatgtac-ttgtggttgt 154  Q
    |||||  || ||||||||| ||||||||||    
T  25122799 gtgaatgtagttgatgtacattgtggttgt 25122770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 14252908 - 14252979
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| |||||  ||||||||||||||||| ||||||||||||||| ||||    
T  14252908 gattatgatgttctgtcggcatcatgggcgacgacctaaatattggtgagaccggtaccgcatgcatctaga 14252979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 9641586 - 9641498
Alignment:
Q  63 cggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    ||||||||||||||| |||  || |||||||||  |||| ||||||||||||||||||||| |||||||| || ||||| |||||||||    
T  9641586 cggtaccgcatgcatttaggtgtcgtgtctagggacataccatgttgtggcatgagtcctaattgtgaaaataattgatatacttgtgg 9641498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 28389033 - 28388887
Alignment:
Q  10 tgattatgatgttctatcggcatcatgag-cgacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcatatcatgtt 107  Q
    |||||||| |||||| | ||||||||| | |||| ||||| |  |||||||   ||||||||||||||| || | || ||||||| |  |||||||| ||    
T  28389033 tgattatggtgttctgttggcatcatggggcgacggcctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctatgggcatatcatatt 28388934  T
Q  108 gtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
     |||||||||||||| |||||||| || ||||| ||||||| |||||    
T  28388933 atggcatgagtcctaattgtgaaaataattgatatacttgtagttgt 28388887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 1846 - 1608
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1846 ttggtgatgattatgatgttctatcggcatcatgggcgaaagcctaaatattggtgagatcggtaccgcatgcatatagagttatgtctaggatcatatc 1747  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1746 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattattggtgatgtttgtatttgatgaattgtggtgtcatgtt 1647  T
Q  203 atgattaattttgtgaatgacgaatattgatgatgatgt 241  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  1646 atgattaattttttgaatgatgaatattgatgatgatgt 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42454 - 42214
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcata 100  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42454 ttttggtgataattatgatgttctatcggcatcatgggcgacggcctaattattggtcagattggtaccgcatgcatatagagttgtgtctaggatcata 42355  T
Q  101 tcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42354 tcatgttgtggcatgagtcctagttgtgaaattacttgatttacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattttggtgtcatg 42255  T
Q  201 ttatgattaattttgtgaatgacgaatattgatgatgatgt 241  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  42254 ttatgattaattttgtaaatgacgaatattgatgatgatgt 42214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 18617650 - 18617420
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    ||||||||||||||  |||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18617650 gattatgatgttctgccggcatcatgggcgacgacctaaatattggtgagatcggtaccgcatgcatttagagttgtgtctaggatcatatcatgttgtg 18617551  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaa 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18617550 gcatgagtcctagttgtgaaattacttgatatacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattttggtgtcatgttatgattaa 18617451  T
Q  211 ttttgtgaatgacgaatattgatgatgatgt 241  Q
    |||||| ||||||||||||||||||||||||    
T  18617450 ttttgtaaatgacgaatattgatgatgatgt 18617420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 21495811 - 21495995
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || | |||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  21495811 gcgacggcctaaatattggtgatgaccagtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 21495910  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||    
T  21495911 ttgatgtacttgtggttgtaagtgattaatggtgatgtttgtacttgatggattgttgtgtcatgttatgattaattatgtgaat 21495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 22885111 - 22884937
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  22885111 aaatattggtgatgaccggtaccacatgcatatagatgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtgaaattacttgatgtact 22885012  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||| |||||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |||||||    
T  22885011 tgtggttgtaagtgattgatggtgatgtttatacttgatggattgttgtgtcatgttatgattaattatgtgaat 22884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 41508666 - 41508809
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| | ||||||||||||| | ||||||||||||||||||||||| ||    
T  41508666 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggcaacgcatgcatatag-ggtgtgtctaggatcatatcatgttttg 41508764  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  41508765 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 41508809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 18610856 - 18610785
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  18610856 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 18610785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 45476020 - 45476112
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    ||||||||||||||| || | || |||||||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  45476020 cggtaccgcatgcatttatgtgtcgtgtctaggggcatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtggttgt 45476112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 20708308 - 20708244
Alignment:
Q  86 gtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||| || ||||| |||||||||    
T  20708308 gtgtctaggaacatatcatgttgtggcatgagttctaattgtgaaaataattgatatacttgtgg 20708244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 21233662 - 21233754
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    ||||||||||||||| || | ||  ||||||||  |||||||| ||||||||||||||||| || ||||| || ||||| |||||| ||||||    
T  21233662 cggtaccgcatgcatttatgtgtcatgtctaggggcatatcatattgtggcatgagtcctaattttgaaaataattgatatacttgcggttgt 21233754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 16000701 - 16000622
Alignment:
Q  62 tcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgat 140  Q
    ||||||| |||||||| |||  || |||||||||| |||| || |||||||||||||||||| |||||||| || |||||    
T  16000701 tcggtacggcatgcatttaggtgtcgtgtctaggaacataccacgttgtggcatgagtcctaattgtgaaaatatttgat 16000622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 16041137 - 16041182
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga 82  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||    
T  16041137 gcgacagcctaaatattggtgatgaccggtaccgcatgcatctaga 16041182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 16042813 - 16042858
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga 82  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||    
T  16042813 gcgacagcctaaatattggtgatgaccggtaccgcatgcatctaga 16042858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 18263068 - 18263132
Alignment:
Q  86 gtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    |||||||||  |||||||| |||||||||||||| || |||||||| |  ||||| |||||||||    
T  18263068 gtgtctagggacatatcatattgtggcatgagtcttaattgtgaaaatggttgatatacttgtgg 18263132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 7527811 - 7527577
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7527811 ttggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 7527712  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtt 202  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||| |||||||| | ||||||||||||||||||||||||||| ||||| |||||||| |    
T  7527711 atgttgtggcatgagtccttgttgtgaaattacttaatgtgcttatggttgtaagcgattaatggtgatgtttgtatttgatggattgttgtgtcatgct 7527612  T
Q  203 atgattaattttgtgaatgacgaatattgatgatg 237  Q
    |||||||||||||||||||| ||||||||||||||    
T  7527611 atgattaattttgtgaatgatgaatattgatgatg 7527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 17908371 - 17908154
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17908371 ttggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 17908272  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||     
T  17908271 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtc 17908172  T
Q  203 atgattaattttgtgaat 220  Q
    |||||||| | |||||||    
T  17908171 atgattaactatgtgaat 17908154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 32949762 - 32949584
Alignment:
Q  44 gcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatg 141  Q
    |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  32949762 gcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattacttgatg 32949663  T
Q  142 tacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||| || |||||||| | |||||||    
T  32949662 tacttgtggttgtaagtgatttatggtgatgtttgtatttgatggattgttgtgtcacgtcatgattaactatgtgaat 32949584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 23985866 - 23986028
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    ||||||||||||||| ||||| || |||||||||  |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  23985866 ttggtgatgattatggtgttcaattggcatcatggacgacggcctaaatattggtcagaccggtaccgcatgcatatagagttgtgtctaggatcatatc 23985965  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaat 165  Q
    ||||||||||||||||||||||||||| | || | ||||||||||||||||| | ||||||||    
T  23985966 atgttgtggcatgagtcctagttgtgagagtattcgatgtacttgtggttgtgcatgattaat 23986028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 2030515 - 2030372
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||| | ||||| |||||||||||||||||| |||||||||||||||| |  || |||||||||||||||||||||||||    
T  2030515 gattatgatgttctgtcggcatcaggggcgacggcctaaatattggtgagaccggtaccgcatgcatacatggt-gtgtctaggatcatatcatgttgtg 2030417  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  2030416 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 2030372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 25003563 - 25003444
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| | |||||||   |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25003563 gattatgatgttctgttggcatcacaggcgacaacctaaatattggtgagaccggtaccacatgcatatagagttgtgtctaggatcatatcatgttgtg 25003464  T
Q  111 gcatgagtcctagttgtgaa 130  Q
    | ||||||| ||||||||||    
T  25003463 gaatgagtcttagttgtgaa 25003444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 34938047 - 34937976
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||  |||||||||||||| ||||    
T  34938047 gattatgatgttctgtcggcatcatgggcgacgacctaaatattggtgagactggtaccgcatgcatctaga 34937976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 23236028 - 23236126
Alignment:
Q  53 ttggtgagatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    ||||||| | ||||||||||||||| |||  ||| ||||||||| | || ||||||||||||||||| ||| |||||||| || ||||| |||||||||    
T  23236028 ttggtgacaacggtaccgcatgcatttaggtgttatgtctaggaacttaccatgttgtggcatgagttctaattgtgaaaataattgatatacttgtgg 23236126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 22254992 - 22254777
Alignment:
Q  6 gtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg 105  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22254992 gtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg 22254893  T
Q  106 ttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttat 204  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  22254892 ttgtggcatgagtcctagttgtgcaaattacttgatgtacttgtggttgtacgtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttat 22254793  T
Q  205 gattaattttgtgaat 220  Q
    |||||||  |||||||    
T  22254792 gattaatgatgtgaat 22254777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 28032576 - 28032812
Alignment:
Q  4 tggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 103  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28032576 tggtgatgattatgatgttttgtcggcatcatgggcgacggcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 28032675  T
Q  104 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtta 203  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||| ||||| |||| ||||||    
T  28032676 tgttgtggcatgagtcctagttgtg-aattacttgatgtacttgtggatgtaagtgatgaatggtgatgtttgtgtttgatggattgttgtgttatgtta 28032774  T
Q  204 tgattaattttgtgaatgacgaatattgatgatgatgt 241  Q
    ||||||||||||||||||| || |||| ||||||||||    
T  28032775 tgattaattttgtgaatgatgattattaatgatgatgt 28032812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 17203239 - 17203001
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||||||||||||||||| ||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17203239 ttggtgatgattatgatgttctgtcggcatcatgggcgacgacctgaatattggtgagatcggtaccgcatgcatatagagttgtgtttaggatcatatc 17203140  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtt 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||  |||||||||    
T  17203139 atgttgtggcatgagtcctagttgtgaaattatttgatgtacttgtggttgtaagtgattaaaggtgatgtttgtatttgatggattgttatgtcatgtt 17203040  T
Q  203 atgattaattttgtgaatgacgaatattgatgatgatgt 241  Q
    |||| ||||||||||||||| || | || ||||||||||    
T  17203039 atgactaattttgtgaatgatgatttttaatgatgatgt 17203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 25254853 - 25255003
Alignment:
Q  71 catgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtg 169  Q
    |||||||||||  |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25254853 catgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattaatggtg 25254952  T
Q  170 atgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||| ||||| ||||||||| |||||||| | |||||||    
T  25254953 atgtttgtatttgatggattgttgtgtcatgtcatgattaactatgtgaat 25255003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 23779437 - 23779612
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtg-aaattacttgatgtac 144  Q
    |||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||||||| ||    
T  23779437 aaatattggtgatgaacggtaccgcatgcatatagttgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgcaaattacttgatgaac 23779536  T
Q  145 ttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    ||||||||||| |||| || |||||||||||||||||| ||  |||| ||| ||||| |||||||||| |||||||    
T  23779537 ttgtggttgtaagtgagtagtggtgatgtttgtatttgttgggttgttgtgccatgtaatgattaattatgtgaat 23779612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 32464571 - 32464398
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgt 109  Q
    ||||||||||||||| ||||||||| | |||||| ||||| |||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  32464571 tgattatgatgttctgtcggcatcagg-gcgacaacctaa-tattggtgtgactggtaccacatgcatatagagttgtgtctaggatcatatcatgttgt 32464474  T
Q  110 ggcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgtacgtgattaatggtgatgtttgtatttgat 184  Q
    | |||||||||||||||||||  || ||||||| | ||||||||||   | |||||| |||||| || ||||||||    
T  32464473 gacatgagtcctagttgtgaatgtatttgatgtgcattgtggttgtgaataattaattgtgatgattatatttgat 32464398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 16294374 - 16294483
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgat 161  Q
    ||||||||||||||| || | || |||||||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||  |||||    
T  16294374 cggtaccgcatgcatttatgtgtcgtgtctaggggcatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtggttgtgagtgat 16294473  T
Q  162 taatggtgat 171  Q
    | || |||||    
T  16294474 tgattgtgat 16294483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 42179974 - 42180045
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| | |||  ||||||||||||||||| ||||||||||||||| ||||    
T  42179974 gattatgatgttctgtcggcatcatgggtgacgacctaaatattggtgagaccggtaccgcatgcatctaga 42180045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 7513621 - 7513671
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgaga 61  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  7513621 gattatgatgttctgtcggcatcatgggcgacagcctaaatattggtgaga 7513671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 9613 - 9829
Alignment:
Q  4 tggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatca 103  Q
    ||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9613 tggtgatgattatgatgttctgtcagcatcatgggcgacagcctaattattggtgagatcggaaccgcatgcatatagagttgtgtctaggatcatatca 9712  T
Q  104 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||| |||| ||||||    
T  9713 tgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttggaagtgattgatggtgatgtttgtatttgatggattgttgtgttatgtta 9812  T
Q  204 tgattaattttgtgaat 220  Q
    ||||||| | |||||||    
T  9813 tgattaagtatgtgaat 9829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30171 - 29950
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatca 98  Q
    |||||||||||||||||||||| | ||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||  ||||||||||||||||    
T  30171 ttttggtgatgattatgatgttttgtcggcatcatgggcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttgtgtctaggatca 30072  T
Q  99 tatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtca 198  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  30071 tatcatgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtca 29972  T
Q  199 tgttatgattaattttgtgaat 220  Q
    ||| |||||||| | |||||||    
T  29971 tgtcatgattaactatgtgaat 29950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 9304211 - 9304431
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatca 98  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||  ||||||||||||||||    
T  9304211 ttttggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttgtgtctaggatca 9304310  T
Q  99 tatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtca 198  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| || |||    
T  9304311 tatcatgaggtgacatgagtcctagttgtgaaattacttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtatca 9304410  T
Q  199 tgttatgattaattttgtgaa 219  Q
    |||||||||||| | ||||||    
T  9304411 tgttatgattaagtatgtgaa 9304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 12903344 - 12903564
Alignment:
Q  2 tttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcata 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  12903344 tttggtgatgattatgatgttctgtcggcatcatgggcgatggcctaaatattggtgagatcggtaccgcatgcatataggtgttgtgtctaggatcata 12903443  T
Q  101 tcatgttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcat 199  Q
    |||||  |||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||| ||||| ||  |||| ||| |||    
T  12903444 tcatgaggtggcatgagacctagttgtgcaaattacttgatgttcttgtggttgtaagtgattaatagtgatgtttgcatttgttgggttgttgtgccat 12903543  T
Q  200 gttatgattaattttgtgaat 220  Q
    ||||||||||||| |||||||    
T  12903544 gttatgattaattatgtgaat 12903564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 14283967 - 14283783
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  14283967 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 14283868  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||    
T  14283867 ttgatgtacttgtggttgtaagtgattaatggtgatgtttgtacttgatggattgttgtgtcatgttatgattaattatgtgaat 14283783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 23887690 - 23887874
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || ||||||||||| |||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||||||||    
T  23887690 gcgacggcctaaatattggtgatgaccggtaccgcatacatataggtgttgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaaattac 23887789  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  23887790 ttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaattatgtgaat 23887874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 38166708 - 38166524
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  38166708 gcgacggcctaaatattggtgatgaccggtgccgcatgcatataggtgctgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 38166609  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  38166608 ttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatgtattgttgtgtcatgttatgattaattatgtgaat 38166524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 11987669 - 11987853
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  |||   ||||||||||||||||||||||    
T  11987669 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgaattgagtcctagttgtgaaattac 11987768  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| | |||||||    
T  11987769 ttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaactatgtgaat 11987853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 17936904 - 17936719
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaa-tta 134  Q
    ||||| |||||||||||||||| || ||| |||||||||||||||  |||||||||||||||||||||||  ||| |||||||||||||||||||| |||    
T  17936904 gcgacggcctaaatattggtgatgaacggaaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaaatta 17936805  T
Q  135 cttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |||||||    
T  17936804 cttgatgtacttgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaactatgtgaat 17936719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 11480593 - 11480767
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  11480593 aaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtgaaattacttgatgtact 11480692  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    ||||||||||  ||||| ||||||||||||  | |||||| ||||| ||||||| |||||||||||| |||||||    
T  11480693 tgtggttgtaaatgattgatggtgatgtttacacttgatggattgttgtgtcatattatgattaattatgtgaat 11480767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 51962704 - 51962847
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||| | ||||| | |||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  51962704 gattatgatgttctgtcggcatcaagggcgacgggctaaatattggtgagaccggtaccgcatgcatatagggt-gtgtctaggatcatatcatgttgtg 51962802  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  51962803 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 51962847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 18738482 - 18738353
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtga-gatcggtaccgcatgcatatagagttgtgtctaggatcatat 101  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||| || |||||||||||||||     
T  18738482 ttggtgatgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgatgatcagtaccgcatgcatatagtgtcgtgtctaggatcataa 18738383  T
Q  102 catg-ttgtggcatgagtcctagttgtgaa 130  Q
    |||| |||||||||||||||||||||||||    
T  18738382 catgattgtggcatgagtcctagttgtgaa 18738353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 54040152 - 54040223
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  54040152 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccacatgcatctaga 54040223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 54049439 - 54049510
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  54049439 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccacatgcatctaga 54049510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 11637024 - 11636956
Alignment:
Q  86 gtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    |||||||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  11637024 gtgtctaggggcatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtggttgt 11636956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 16301576 - 16301790
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  16301576 ttggtgat-attatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagatag-taccgcatgcatatagagttgtgtctaggatcatatc 16301673  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgtt 202  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||  || ||||||    
T  16301674 atgttgtggcatgagtcctagttgtgaaa-tacttgatttacttgtggttgtaagtgattaatggtgatgtttgtgtttgatggattgttatgccatgtt 16301772  T
Q  203 atgattaattttgtgaat 220  Q
    ||| |||||| |||||||    
T  16301773 atggttaattatgtgaat 16301790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 32278121 - 32278305
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||  ||  ||| ||||||||||||||||||||||||    
T  32278121 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatattttgaggtgacatgagtcctagttgtgaaattac 32278220  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||    
T  32278221 ttgatgtacttgtggttgtaagtgattgatggtgatgtttatatttgatggattgttgtgtcatgttatgattaattatgtgaat 32278305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 29664876 - 29664692
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  29664876 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 29664777  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||| | || |||||| |||| ||| | |||||||    
T  29664776 ttgatgtacgtgtggttgtaagtgattaatggtgatgtttgtgtttgatggattattgtatcatgtcatgagtaactatgtgaat 29664692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 14151165 - 14150999
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgt 109  Q
    |||| ||||||| | ||||||||||| |||||  ||||||||||||||||| |||||||||||||||||||  || ||||||||||||||||||||||||    
T  14151165 gattttgatgttttgtcggcatcatgggcgacgacctaaatattggtgagaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgttgt 14151066  T
Q  110 ggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttg 176  Q
    ||||||||| |||||||||||| || ||||||| ||| |||||||  ||||||||| ||||| ||||    
T  14151065 ggcatgagtgctagttgtgaaaatatttgatgtgcttatggttgtgagtgattaattgtgatatttg 14150999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 27739701 - 27739537
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtga-gatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg-ttg 108  Q
    |||||||||||||| | ||||||||| ||||| |||||||||||||||| || || || ||||||| ||||| || |||||||||||||||||||| |||    
T  27739701 gattatgatgttctgttggcatcatgggcgacggcctaaatattggtgatgaccgatatcgcatgcctatagtgtcgtgtctaggatcatatcatgattg 27739602  T
Q  109 tggcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgtacgtgattaatggtgatg 172  Q
    ||||||||||||||||||||||  || ||||||||| | |||||||| | |||||||| ||||||    
T  27739601 tggcatgagtcctagttgtgaatgtagttgatgtacgtggtggttgtgcatgattaattgtgatg 27739537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 19627926 - 19627855
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  19627926 gattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19627855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 19671023 - 19670935
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    ||||||||||||||| || | || |||||||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||    
T  19671023 cggtaccgcatgcatttatgtgtcgtgtctagggacatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtgg 19670935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 31469169 - 31469261
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    ||||||||||||||| || | || |||||||||  |||||||| ||||||||||||||||| ||||| || || ||||| |||||||||||||    
T  31469169 cggtaccgcatgcatttatgtgtcgtgtctagggacatatcatattgtggcatgagtcctaattgtggaaataattgatatacttgtggttgt 31469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26523725 - 26523790
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgt 127  Q
    ||||||||||||||| || |||| |||||||||| ||||  |||||||||||||||||||||||||    
T  26523725 cggtaccgcatgcatgtaagagtcgtgtctaggaacatagtatgttgtggcatgagtcctagttgt 26523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 35010882 - 35010930
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtga 59  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||||||||    
T  35010882 gattatgatgttctgtcgacatcatgggcgacggcctaaatattggtga 35010930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7559 - 7780
Alignment:
Q  1 ttttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcat 99  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  7559 ttttggtgatgattatgatgttctatcggcatcatgggcggcggcctaaatattggtgagatcggtaccgcatgcatataggtgttgtgtataggatcat 7658  T
Q  100 atcatgttgtggcatgagtcctagttgtg-aaattacttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtca 198  Q
    ||||||  ||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||  ||||  || ||    
T  7659 atcatgaggtgacatgagtcctagttgtgcaaattacttgatgtacttgtggatgtaagtgattaatggtgatgtttgcatttgttgggttgttatgcca 7758  T
Q  199 tgttatgattaattttgtgaat 220  Q
    |||||||||||||| |||||||    
T  7759 tgttatgattaattatgtgaat 7780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 16608 - 16426
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||  ||| || |||||||||||||||||||||    
T  16608 gcgacggcctaaatattggtgatgaccggtaccgcatgcatatagatgttgtgtctaggatcatatcatgaggtgacacgagtcctagttgtgaaattac 16509  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtga 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  16508 ttgatgtacttgtggttgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaattatgtga 16426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 165940 - 166107
Alignment:
Q  3 ttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatc 102  Q
    |||||||||||||||||||||| ||||||||||| || || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  165940 ttggtgatgattatgatgttctgtcggcatcatgggctacggcctaaatat-ggtgagatcggtaccgcatgcatatagggttgtgtctaggatcatatc 166038  T
Q  103 atgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaatggtgat 171  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||||||    
T  166039 atgttgtggcatgagtcctagttgtaaaattacttgatgttcttatggttgtaagtgattaatggtgat 166107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 2181 - 2357
Alignment:
Q  46 ctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgta 143  Q
    |||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  2181 ctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattacttgatgta 2280  T
Q  144 cttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||| |||||| |||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||    
T  2281 cttgtggttgtaagtgattgatggtgatgtttatatttgatggattgttgtatcatgttatgattaattatgtgaat 2357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 67194 - 67368
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||    
T  67194 aaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcataaggtgacatgagtcccagttgtgaaattacttgatgtact 67293  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||    
T  67294 tgtggttgtaagtgattaatggtgatgtttgtatttaatggattgttgtgtcatgttatgattaattatgtgaat 67368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 44725 - 44551
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  44725 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagttctagttgtgaaattac 44626  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaa 210  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  44625 ttgatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaa 44551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 52921 - 52747
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  || ||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  52921 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 52822  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaa 210  Q
    || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  52821 ttaatgtacttgtgattgtaagtgattaatggtgatgtttgtatttgatggattgttgtgtcatgtcatgattaa 52747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 14959 - 15133
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || ||||||||||||||| |||  ||||||||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||    
T  14959 aaatattggtgatgaccggtaccgcatgcatgtaggtgttgtgtctaggatcatatcataaggtgacatgagtcctaattgtgaaattacttgatgtact 15058  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  15059 tgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaattatgtgaat 15133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 9793975 - 9793801
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || ||||||||||||||| |||  ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  9793975 aaatattggtgatgaccggtaccgcatgcatgtaggtgttgtgtctaggatcatatcataaggtgacatgagtcctagttgtgaaattacttgatgtact 9793876  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
     ||||||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  9793875 cgtggttgtaagtgattgatggtgatgtttgtatttgatggattgttgtgtcatgttatgattaattatgtgaat 9793801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 22737151 - 22736983
Alignment:
Q  44 gcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgta 143  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |     
T  22737151 gcctaaatattggtgagaccggtaccgcatgcatatagagtggtgtctaggatcatatcatgatgtggcatgagtcctagttgtgaaattacttgttatg 22737052  T
Q  144 cttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaatt 212  Q
    |||||| ||||   ||||| ||||||||||||| |||  ||| ||||| || |||||||||||||||||    
T  22737051 cttgtgattgtgaatgattcatggtgatgtttgcattcaatggattgttgtatcatgttatgattaatt 22736983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 32462036 - 32462220
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||| ||||||||||||  |||||||| ||||||||||||||  ||| ||||||||||||||||||||||||    
T  32462036 gcgacggcctaaatattggtgatgaccggtactgcatgcatataggtgttgtgtccaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 32462135  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||| |  |||||||| | |||||||    
T  32462136 ttgatgtacttgtggttgtaagtgattaatgatgatgtttgtatttgatggattgttgtgtcacgacatgattaactatgtgaat 32462220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 23271679 - 23271863
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| |||||||||||||||||||||||     
T  23271679 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattaa 23271778  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||||||| |||||  | |||||| |||||||| | |||||||    
T  23271779 ttgatgtacttgtgattgtgagtgattaatggtgatgcttgtatttgatggattgttctatcatgtcatgattaactatgtgaat 23271863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 8043678 - 8043493
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaa-tta 134  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  ||| |||||||||||||||||||  ||| |||||||||||||||||||| |||    
T  8043678 gcgacggcctaaatattggtgatgaacggtaccgcatgcatataggtgttatgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaaatta 8043579  T
Q  135 cttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
     ||||||| ||||||||||||  ||||| ||||||||||||||||||| || | ||| ||| ||||||| |||||||| |||||||    
T  8043578 attgatgtgcttgtggttgtaaatgattgatggtgatgtttgtatttgttggactgttgtgccatgttaagattaattatgtgaat 8043493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 55378347 - 55378466
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatg-ttg 108  Q
    ||||||||||||||| ||||||||| | ||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||    
T  55378347 tgattatgatgttctgtcggcatcagg-gcgacggcctaa-tattggtgtgaccggtaccgcatgcatatagagttgtgtctaggatcatatcatgattg 55378444  T
Q  109 tggcatgagtcctagttgtgaa 130  Q
    ||||||||||||||||||||||    
T  55378445 tggcatgagtcctagttgtgaa 55378466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 14503087 - 14503219
Alignment:
Q  38 gcgacagcctaaat-attggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaatta 134  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||  ||| |||||||||||  ||||||||||    
T  14503087 gcgacggcctaaattattggtgatgatcggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctaactgtgaaatta 14503186  T
Q  135 cttgatgtacttgtggttgtacgtgattaatgg 167  Q
    ||||||||||||||||||||| |||||| ||||    
T  14503187 cttgatgtacttgtggttgtaagtgattgatgg 14503219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19699178 - 19699249
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  19699178 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19699249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19709763 - 19709834
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  19709763 gattatgatgttatgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 19709834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 13595659 - 13595747
Alignment:
Q  63 cggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    ||||||||||||||| |||  || |||||||||  |||| ||||||||||||||||||||| |||||||| || ||||| |||||||||    
T  13595659 cggtaccgcatgcatttaggtgtcgtgtctagggacataccatgttgtggcatgagtcctaattgtgaaaataattgatatacttgtgg 13595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 13448616 - 13448758
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagc-gacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcatatcatgtt 107  Q
    ||||||||||||||| | ||||||||| |  ||| ||||| |  |||||||   ||||||||||||||| || | ||  ||||||||  |||||||| ||    
T  13448616 tgattatgatgttctgttggcatcatggggtgacggcctagacgttggtgacgacggtaccgcatgcatttatgcgtcatgtctagggacatatcatatt 13448715  T
Q  108 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    |||||||||||||||||||||||| || | ||| |||||||||    
T  13448716 gtggcatgagtcctagttgtgaaaataatggatatacttgtgg 13448758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 7848951 - 7848885
Alignment:
Q  14 tatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatata 80  Q
    ||||||||||| |||||||||   |||||| ||||| |||||||||||  |||||| ||||||||||    
T  7848951 tatgatgttctgtcggcatcaaaggcgacaacctaattattggtgagactggtaccacatgcatata 7848885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 17882 - 17721
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattac 135  Q
    ||||| |||||||||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  17882 gcgacggcctaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattac 17783  T
Q  136 ttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtca 198  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||    
T  17782 ttgatgtacttgtggttgtaagtgattaatggtgatg-ttgtatttgatggattgttgtgtca 17721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9574 - 9717
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||    
T  9574 gattatgatgttctatcggcatcaggggcgacggcctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgttatg 9672  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  9673 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 9717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 4094 - 3921
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || || ||||||||| ||||||  |||||||||| ||||||||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  4094 aaatattggtgatgaccgataccgcatgtatataggtgttgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaa-ttacttgatgtact 3996  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    ||||||||||||||||| ||||||||||| |||||| ||| |||||  ||||||||||||||||||  |||||||    
T  3995 tgtggttgtacgtgattgatggtgatgttcgtatttaatggattgttatgtcatgttatgattaatcatgtgaat 3921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 1586 - 1422
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || ||||||||||||||| |||  || ||||||| ||||||||||||  ||| |||||||||||||||||||||||||| |||||||    
T  1586 aaatattggtgatgaccggtaccgcatgcatttaggtgtcgtgtctatgatcatatcatgaggtgacatgagtcctagttgtgaaattacttaatgtact 1487  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaa 210  Q
    ||| |||||| ||||||||||||||||||||||| ||||| ||||  ||||||||| ||||||||    
T  1486 tgtagttgtaagtgattaatggtgatgtttgtatatgatggattggtgtgtcatgtcatgattaa 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 12495 - 12352
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||| | ||||||||||| |||||   |||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  12495 gattatgatgttttttcggcatcatgggcgactttctaaatattggtgagaccggtaccgcatgcatatagggt-gtgtctaggatcatatcatgttgtg 12397  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  12396 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 58042 - 58206
Alignment:
Q  48 aaatattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtact 145  Q
    |||||||||||| || ||||||||||||||| |||  || ||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||    
T  58042 aaatattggtgatgaccggtaccgcatgcatgtaggtgtcgtgtctaggatcatatcatgaggtgacatgagtcctagttgtgaaattacttaatgtact 58141  T
Q  146 tgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaa 210  Q
    ||| |||||| |||||||||||| |||||||||| ||||| ||||  ||||||||| ||||||||    
T  58142 tgtagttgtaagtgattaatggtaatgtttgtatatgatggattggtgtgtcatgtcatgattaa 58206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1666 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1666
Description:

Target: scaffold1666; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 1100 - 1259
Alignment:
Q  63 cggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaa-ttacttgatgtacttgtggttgtacgtga 160  Q
    |||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||||| |||||||||||| |||| ||||||||||||||||||| ||||    
T  1100 cggtaccgcatgcatataggtgttgtgtctatgatcatatcatgaggtgacatgagttctagttgtgaaaattacgtgatgtacttgtggttgtaagtga 1199  T
Q  161 ttaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaattttgtgaat 220  Q
    || ||||||||||| ||||||| || ||||| ||| |||||||||||||||| |||||||    
T  1200 ttgatggtgatgttagtatttgttggattgttgtgccatgttatgattaattatgtgaat 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 28 - 171
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||| | |||||  ||||||||||||||||| |||||||||||||||| |  || |||||||||||||||||||||||||    
T  28 gattatgatgttctgtcggcatcaagggcgacgacctaaatattggtgagaccggtaccgcatgcatacatggt-gtgtctaggatcatatcatgttgtg 126  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac-ttgtggttgt 154  Q
    ||||||||||||||||||||  || ||||||||| ||||||||||    
T  127 gcatgagtcctagttgtgaatgtagttgatgtacattgtggttgt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 7508 - 7640
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||| | |||||  ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||    
T  7508 gattatgatgttctgtcggcatcaagggcgacgacctaaatattggtgagaccggtaccgcatgcatatag-ggtgtgtctaggatcatatcatgtaatg 7606  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac 144  Q
    ||||||||||||||||||||  || |||||||||    
T  7607 gcatgagtcctagttgtgaatgtagttgatgtac 7640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 35325 - 35499
Alignment:
Q  38 gcgacagcctaaa-tattggtga-gatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaatta 134  Q
    ||||||||||||| ||||||||| || |||||||||||||||||||  |||||||||||||||||||||||  ||| |||||||   ||||| ||| |||    
T  35325 gcgacagcctaaaatattggtgatgaccggtaccgcatgcatataggtgttgtgtctaggatcatatcatgaggtgacatgagt---agttgggaattta 35421  T
Q  135 cttgatgtacttgtggttgtacgtgattaatggtgatgtttgtatttgatgaattgtggtgtcatgttatgattaatt 212  Q
    ||||||||||||||| |||||  ||||| |||||||||||||||||||||| ||||| || ||||||||||| |||||    
T  35422 cttgatgtacttgtgattgtaaatgattcatggtgatgtttgtatttgatggattgttgtatcatgttatgagtaatt 35499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 167711 - 167843
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatatagagttgtgtctaggatcatatcatgttgtg 110  Q
    |||||||||||||| ||||||||| | | |||   |||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  167711 gattatgatgttctgtcggcatcaagggagacgaactaaatattggtgagaccggtaccgcatgcatatagggt-gtgtctaggatcatatcatgttgtg 167809  T
Q  111 gcatgagtcctagttgtgaaattacttgatgtac 144  Q
    ||||||||||||||||||||  || |||||||||    
T  167810 gcatgagtcctagttgtgaatgtagttgatgtac 167843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 2496 - 2426
Alignment:
Q  4 tggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatg 74  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||    
T  2496 tggtgatgattatgatgttctatcggcatcatgggcgacggcctaattattggtgagattggtaccgcatg 2426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 250 - 331
Alignment:
Q  2 tttggtgatgattatgatgttctatcggcatcatgagcgacagcctaaatattggtga-gatcggtaccgcatgcatataga 82  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| || ||||||||||||||| ||||    
T  250 tttggtgatgattatgatgttctatcggcatcatgggcgacgacctaaatattggtgatgaacggtaccgcatgcatctaga 331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 26903 - 26831
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||    
T  26903 tgattatgatgttctgtcggcatcatgggcgacggcctaaatattggtgagaccggtaccgcatgcatctaga 26831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 27917 - 27846
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||| ||| ||||| |||||||||||| ||||| ||||||||||||||| ||||    
T  27917 gattatgatgttctgtcggcattatgggcgacggcctaaatattgatgagaccggtaccgcatgcatctaga 27846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 39913 - 39842
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||| ||| ||||| |||||||||||| ||||| ||||||||||||||| ||||    
T  39913 gattatgatgttctgtcggcattatgggcgacggcctaaatattgatgagaccggtaccgcatgcatctaga 39842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 23464 - 23393
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||| ||||    
T  23464 gattatgatgttctgtcggcatcatgggcgacggcctaaatatttgtgagaccggtaccgcatgcatctaga 23393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 20252794 - 20252723
Alignment:
Q  11 gattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga 82  Q
    |||||||||||||| ||||||||||| | ||| |||||||||||||||||| ||||||||||||||| ||||    
T  20252794 gattatgatgttctgtcggcatcatgggtgacggcctaaatattggtgagaccggtaccgcatgcatctaga 20252723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 18164712 - 18164597
Alignment:
Q  66 taccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgtacgtgattaa 164  Q
    |||||||||||| || | |||||||| |||  |||||||| |||||||||||||||||  ||||||| || ||||  ||||||||| |||  |||||| |    
T  18164712 taccgcatgcatttatgtgttgtgtcgagggacatatcatattgtggcatgagtcctaaatgtgaaa-taattgacatacttgtggatgtgagtgattga 18164614  T
Q  165 tggtgatgtttgtattt 181  Q
    | ||||| |||| ||||    
T  18164613 ttgtgatatttgaattt 18164597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 4386 - 4505
Alignment:
Q  53 ttggtgagatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggt 151  Q
    ||||||| | ||||||||||||||| |||  || |||||||||  |||| ||||||||||||||||||||| |||||||| || ||||| |||||||||     
T  4386 ttggtgacaacggtaccgcatgcatttaggtgtggtgtctagggacataccatgttgtggcatgagtcctaattgtgaaaataattgatatacttgtgga 4485  T
Q  152 tgtacgtgattaatggtgat 171  Q
    |||  |||||| || |||||    
T  4486 tgtgagtgattgattgtgat 4505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 28621 - 28553
Alignment:
Q  86 gtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    |||||||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||    
T  28621 gtgtctagggccatatcatattgtggcatgagtcctaattgtgaaaatagttgatatacttgtggttgt 28553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 20661 - 20569
Alignment:
Q  63 cggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    ||||||||||||||| || | || |||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||    
T  20661 cggtaccgcatgcatttatgtgtcgtgtataggggcatatcatattgtggcatgagtcctaattgtgaaaataattgatatacttgtgattgt 20569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 98562 - 98683
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatataga-gttgtgtctaggatcatatcatgttg 108  Q
    ||||||||||||||| | ||||||||| | ||| ||||| |  |||||||  |||||||| ||||||| |||  || ||||||| || |||| |||||||    
T  98562 tgattatgatgttctgttggcatcatgggtgacggcctagacgttggtgatgtcggtaccacatgcatttaggtgtcgtgtctaagaacataccatgttg 98661  T
Q  109 tggcatgagtcctagttgtgaa 130  Q
    |||||||| ||||| |||||||    
T  98662 tggcatgactcctaattgtgaa 98683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 8803 - 8740
Alignment:
Q  65 gtaccgcatgcatatag-agttgtgtctaggatcatatcatgttgtggcatgagtcctagttgt 127  Q
    ||||| ||||||| ||| ||| |||||||||| |||| ||||||||||||||||||||||||||    
T  8803 gtaccacatgcatgtaggagtcgtgtctaggaacataacatgttgtggcatgagtcctagttgt 8740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 104542 - 104398
Alignment:
Q  10 tgattatgatgttctatcggcatcatgagcgacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcatatcatgttg 108  Q
    |||||||| |||||| | ||||||||| | |||  |||| |  |||||||   ||||||||||||||| || | || |||||||||  |||||||| |||    
T  104542 tgattatggtgttctgttggcatcatgggtgacgacctagacgttggtgacgacggtaccgcatgcatttatgtgtcgtgtctagggacatatcatattg 104443  T
Q  109 tggcatgagtcctagttgtgaaattacttgatgtacttgtggttgt 154  Q
    ||||||||||||||  ||||||| || ||||  |||||||||||||    
T  104442 tggcatgagtcctaaatgtgaaa-taattgacatacttgtggttgt 104398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 3285 - 3427
Alignment:
Q  10 tgattatgatgttctatcggcatcatgag-cgacagcctaaatattggtgagatcggtaccgcatgcatata-gagttgtgtctaggatcatatcatgtt 107  Q
    |||||||| |||||| | ||||||||| | |||| ||||| |  |||||||   |||||||||||| || || | || |||||||||  |||||||| ||    
T  3285 tgattatggtgttctgttggcatcatggggcgacggcctagacgttggtgatgacggtaccgcatgaatttatgtgtcgtgtctaggggcatatcatatt 3384  T
Q  108 gtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    || |||||||||||| |||||||| || ||||| | |||||||    
T  3385 gtagcatgagtcctaattgtgaaaataattgatatgcttgtgg 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 36416 - 36352
Alignment:
Q  86 gtgtctaggatcatatcatgttgtggcatgagtcctagttgtgaaattacttgatgtacttgtgg 150  Q
    |||||||||  |||||||| |||||||||||||| || || ||||| || ||||| |||||||||    
T  36416 gtgtctagggacatatcatattgtggcatgagtcataattttgaaaataattgatatacttgtgg 36352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 35750 - 35794
Alignment:
Q  38 gcgacagcctaaatattggtga-gatcggtaccgcatgcatatag 81  Q
    ||||| |||||||||||||||| || |||||||||||||||||||    
T  35750 gcgacggcctaaatattggtgatgaccggtaccgcatgcatatag 35794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University