View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_high_10 (Length: 359)
Name: NF12987_high_10
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 28497789 - 28497461
Alignment:
| Q |
19 |
agaagtcgcatccaaggaaaagatgattaatttattcctccttatcgcaccctctagagcacaacaatgaaactacaagcaacacttcacgacgaggtaa |
118 |
Q |
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| T |
28497789 |
agaagtcgcatccaagaaaaagatgattaatttattcctccttatcgcaccctctagagcacaacaacgaacccacaagcaatacttcacgacgaggtaa |
28497690 |
T |
|
| Q |
119 |
attatcttttgttggcatgggtgaatctactctaagcataagtgtggctagagcctcaccaaaattttcacaaaattttagtttacatatgaatgatgtc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
28497689 |
attatcttttgttggcatgggtgaatctactctaagcctaagtgtggctagagcctcaccaaaattatcacaaaattttagtttacatatgaaggatgtc |
28497590 |
T |
|
| Q |
219 |
tattagagcaatcatttggtttcaattagcaactgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttat |
318 |
Q |
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| T |
28497589 |
tattagagcaattatttggtttcatttagcaactgttaggattacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttat |
28497490 |
T |
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| Q |
319 |
gagtgaaataatacatagtctttaatttt |
347 |
Q |
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| T |
28497489 |
gagtgaaataatacatagtctttaatttt |
28497461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 346
Target Start/End: Complemental strand, 5476323 - 5476206
Alignment:
| Q |
230 |
tcatttggtttcaattagcaactgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgtt-ttatgagtgaaata |
328 |
Q |
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| T |
5476323 |
tcattttgttacaatcagcaattattaggactacaaatgaacatgatctaataaaactagttcaaataaaactactaaaactattattttgagtgaaata |
5476224 |
T |
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| Q |
329 |
atacatagtctttaattt |
346 |
Q |
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|||||||| |||||||| |
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| T |
5476223 |
ttacatagtttttaattt |
5476206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 8323290 - 8323205
Alignment:
| Q |
261 |
tacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgagtgaaataatacatagtctttaattt |
346 |
Q |
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|||||||| | ||||||||||||||| || | |||||||||| || ||| | ||| ||||||||||||||||||| |||||||| |
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| T |
8323290 |
tacaaatgaatatgagctaataaaactaacctcaataaaactattaaaacagcttttcgagtgaaataatacatagtttttaattt |
8323205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 39721596 - 39721531
Alignment:
| Q |
241 |
caattagcaactgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactacta |
306 |
Q |
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| T |
39721596 |
caattaacaattgttagggttacaaatgaacttgaactaataaaaatagcccaaataaaactacta |
39721531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 1806269 - 1806357
Alignment:
| Q |
259 |
gttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgttttatgag-tgaaataatacatagtctttaattt |
346 |
Q |
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|||||||||| || ||| ||||||||| | |||||| |||||||||| ||||||| | | || ||||||| |||| |||||||||||| |
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| T |
1806269 |
gttacaaatgaacttgaactaataaaattagaccaaacaaaactactacaactgttattttaggtgaaatagtacacagtctttaattt |
1806357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 47377616 - 47377695
Alignment:
| Q |
252 |
tgttagggttacaaatggacatgagctaataaaaccaaaccaaataaaactactagaactgtt-ttatgagtgaaataata |
331 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||| || ||| |||||||||| |
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| T |
47377616 |
tgttagggttataaatagacatgagctaataaaacttgcccaaataaaactacta-aactgttattttgaatgaaataata |
47377695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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