View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12987_high_18 (Length: 227)
Name: NF12987_high_18
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 32724253 - 32724437
Alignment:
| Q |
13 |
tatagagagatatcaaagaggggatagagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaataaagaattttcactt |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
32724253 |
tatagagagatatcagagaggggatagagattcatgagtataaattttggttccctatattaactttcttctggtttctttcaataaagaattttcactt |
32724352 |
T |
|
| Q |
113 |
taactattatttgttggtgatacaccttcaacattgatggtttacattgtcaatttctaattgaagggacaaaagtcatctaacg |
197 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32724353 |
tcactattatttgttggtgatacaccttcaacattgatggtttacattgccaatttctaattgaagggacaaaagtcatctaacg |
32724437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 4001641 - 4001789
Alignment:
| Q |
38 |
agagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaa---------taaagaattttcactttaactattatttgttg |
128 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||| ||||| |||||||| |||||||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
4001641 |
agagattcatgactataaattttagttctctatgttaacatccttctggtttctttcaacttttttatttaagaattttcacttttactattatttgttg |
4001740 |
T |
|
| Q |
129 |
gtgatacaccttcaacattgatggtttaca-ttgtcaatttctaattga |
176 |
Q |
| |
|
|| |||||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
4001741 |
gttatacaccttcaatattgatggtttacatttgtcagtttctaattga |
4001789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University