View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12987_high_3 (Length: 671)

Name: NF12987_high_3
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12987_high_3
NF12987_high_3
[»] chr8 (10 HSPs)
chr8 (1-659)||(2430414-2431078)
chr8 (340-645)||(2434339-2434645)
chr8 (376-634)||(1457834-1458092)
chr8 (376-634)||(2427541-2427799)
chr8 (401-556)||(2519215-2519370)
chr8 (397-556)||(2498881-2499037)
chr8 (401-556)||(2507413-2507568)
chr8 (401-556)||(2514503-2514658)
chr8 (1-51)||(2434054-2434104)
chr8 (236-273)||(2434227-2434264)
[»] chr4 (1 HSPs)
chr4 (74-195)||(8358469-8358591)
[»] chr2 (2 HSPs)
chr2 (78-217)||(22399105-22399247)
chr2 (75-166)||(474683-474775)
[»] chr1 (1 HSPs)
chr1 (75-133)||(45682541-45682600)
[»] chr7 (1 HSPs)
chr7 (75-166)||(41317018-41317110)
[»] chr6 (1 HSPs)
chr6 (447-499)||(11845932-11845984)


Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Original strand, 2430414 - 2431078
Alignment:
Q  1 tctttaacttaacttcatataagtatttggtcttctatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatct 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430414 tctttaacttaacttcatataagtatttggtcttttatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatct 2430513  T
Q  101 agattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatacatttaaaacttgaatattcatatcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2430514 agattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatagatttaaaagttgaatattcatatcaaat 2430613  T
Q  201 ggatcaaaagggcaaaaataatgtgnnnnnnnnnga------agataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgt 294  Q
    |||||||||||||||||||||||||          |      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430614 ggatcaaaagggcaaaaataatgtgaaaaaaaagaagataaaagataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgt 2430713  T
Q  295 tagatgaatgtacagaccatgtggccagttgtattagatgtgtacatgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatggcgga 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430714 tagatgaatgtacagaccatgtggccagttgtattagatgtgtacatgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatggcgga 2430813  T
Q  395 aatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttcca 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2430814 aatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtactataactctcaagcttcca 2430913  T
Q  495 caaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgagaatccgcatgaccaaagacactactgcagaacttggtg 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430914 caaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgagaatccgcatgaccaaagacactactgcagaacttggtg 2431013  T
Q  595 ctctcacccctggttttgtatgtcatgctctctctttcatcaattattattcatcaatttatttt 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2431014 ctctcacccctggttttgtatgtcatgctctctctttcatcaattattatttatcaatttatttt 2431078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 340 - 645
Target Start/End: Original strand, 2434339 - 2434645
Alignment:
Q  340 atgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatggcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttt 439  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2434339 atgtacaacacaaacaccacaaagattttagtgacacaattcctgagatggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttt 2434438  T
Q  440 tcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtct 539  Q
    |||||||||||||||| | || ||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  2434439 tcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgtggttttgctcaaaaatctgtacttgtct 2434538  T
Q  540 tgtgatccttacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcatgctctct-ctttcatcaat 638  Q
    |||||||||||||||||| |||  |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  2434539 tgtgatccttacatgagactcctgatgaccaaggacactactgcaggacttggtgctctcacccctggttctgtatgtcatgctctctcctttcatcaat 2434638  T
Q  639 tattatt 645  Q
    |||||||    
T  2434639 tattatt 2434645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 376 - 634
Target Start/End: Original strand, 1457834 - 1458092
Alignment:
Q  376 caattcctgagatggcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtac 475  Q
    |||||||| | |||||| || |||| ||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||| |||| || |||||    
T  1457834 caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtac 1457933  T
Q  476 cataactctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgagaatccgcatgaccaaagac 575  Q
     || | |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||| |||||||   |||| |||| |||    
T  1457934 aattattctcaaccttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggac 1458033  T
Q  576 actactgcagaacttggtgctctcacccctggttttgtatgtcatgctctctctttcat 634  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1458034 actattgcaggacttggtggtctcacccctggttctgtatgtcatgctctctctttcat 1458092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 376 - 634
Target Start/End: Original strand, 2427541 - 2427799
Alignment:
Q  376 caattcctgagatggcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtac 475  Q
    |||||||| | |||||| || |||| ||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||| |||| || |||||    
T  2427541 caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtac 2427640  T
Q  476 cataactctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgagaatccgcatgaccaaagac 575  Q
     || | |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||| |||||||   |||| |||| |||    
T  2427641 aattattctcaaccttccacaaggttccaatgatgttgttctgctcaaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggac 2427740  T
Q  576 actactgcagaacttggtgctctcacccctggttttgtatgtcatgctctctctttcat 634  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  2427741 actattgcaggacttggtggtctcacccctggttctgtatgtcatgctctctctttcat 2427799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 401 - 556
Target Start/End: Complemental strand, 2519370 - 2519215
Alignment:
Q  401 gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttccacaaggt 500  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||||||| |    
T  2519370 gaacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttccacaagct 2519271  T
Q  501 tcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag 556  Q
    || ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  2519270 tccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatgag 2519215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 397 - 556
Target Start/End: Complemental strand, 2499037 - 2498881
Alignment:
Q  397 tgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttccaca 496  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | || ||||  || ||||| |||||||||||    
T  2499037 tgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccaca 2498938  T
Q  497 aggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag 556  Q
    |||||| |||||   |||||||||||||||| | ||||||||||||||||| | ||||||    
T  2498937 aggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatccattcatgag 2498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 401 - 556
Target Start/End: Complemental strand, 2507568 - 2507413
Alignment:
Q  401 gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttccacaaggt 500  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||||| | || ||||| || ||||| |||| ||| ||||||||| |||||    
T  2507568 gaacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt 2507469  T
Q  501 tcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag 556  Q
    || ||||||  |||  || | |||||||| ||||||||||||||||||||||||||    
T  2507468 tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag 2507413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 401 - 556
Target Start/End: Complemental strand, 2514658 - 2514503
Alignment:
Q  401 gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtaccataactctcaagcttccacaaggt 500  Q
    |||| |||||||| |||||||  | |||||||||||||||||||||||||||||| | || ||||| || ||||| |||| ||| ||||||||| |||||    
T  2514658 gaaccagcaagtgcttctgaaacattatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt 2514559  T
Q  501 tcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag 556  Q
    || ||||||  |||  || | |||||||| |||||||||||||||||||| |||||    
T  2514558 tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttaaatgag 2514503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2434054 - 2434104
Alignment:
Q  1 tctttaacttaacttcatataagtatttggtcttctatattttgttcacgt 51  Q
    ||||||||||||||||| |||||||||||||||| ||||| || |||||||    
T  2434054 tctttaacttaacttcagataagtatttggtcttttatatgtttttcacgt 2434104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 2434227 - 2434264
Alignment:
Q  236 aagataaaagactaaatcgttccttgaaattaaattaa 273  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  2434227 aagataaaaaactaaatcgttacttgaaattaaattaa 2434264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 8358591 - 8358469
Alignment:
Q  74 acatatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatac 172  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||| |  |||||||||| ||| | |||||| | |||||||| ||| ||| |||||||      
T  8358591 acatatgaattttcaagcttcaaatctaagattcatatgcaaacatatatgaaagaccgtaagtttaaagattaagaggtcataagaaaaaaaatcatgg 8358492  T
Q  173 atttaaaacttgaatattcatat 195  Q
    | ||||| |||||| ||||||||    
T  8358491 aattaaagcttgaaaattcatat 8358469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 22399105 - 22399247
Alignment:
Q  78 atgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatc-atacatt 175  Q
    ||||||| ||||||| |||||||| |||||| ||| |||| | | ||||||||||||||| | || ||||||||||||| || || |||| | ||| |||    
T  22399105 atgaattttcaagcttcaaatctaagattcaaatgtaaacataggtgaaagaccataaattttaaaactgagaggtcactagaaattaaaacaatatatt 22399204  T
Q  176 taaaacttgaatattcatat-caaatggatcaaaagggcaaaa 217  Q
    | || |||||| |||||||| |||||| | |||||| ||||||    
T  22399205 tgaagcttgaaaattcatatgcaaatgtaccaaaagagcaaaa 22399247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 474775 - 474683
Alignment:
Q  75 catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa 166  Q
    |||||||||| ||||||| ||||| || ||||||||||||||| ||| |||| ||||||| || | ||||||||||  ||||| | |||||||    
T  474775 catatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcacaggaaaataaa 474683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 45682541 - 45682600
Alignment:
Q  75 catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccata 133  Q
    |||||||||| |||||||  |||| || ||||||||||||||| ||||||||||||||||    
T  45682541 catatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccata 45682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 41317110 - 41317018
Alignment:
Q  75 catatgaattatcaagctccaaatctaga-ttcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa 166  Q
    |||||| ||| |||||||  ||||||| | |||||| |||||| || ||||||||||||| || | |||| || ||||||||||| |||||||    
T  41317110 catatgtattttcaagctttaaatctaaaattcataggcaaacatgaatgaaagaccatagatttgaagattgggaggtcacaagaaaataaa 41317018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 499
Target Start/End: Original strand, 11845932 - 11845984
Alignment:
Q  447 gaatcagacatgaatattgtagacagtaccataactctcaagcttccacaagg 499  Q
    |||||||||||||| ||||| ||||||||||||||  ||||  ||||||||||    
T  11845932 gaatcagacatgaacattgttgacagtaccataacattcaaaattccacaagg 11845984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University