View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_high_6 (Length: 469)
Name: NF12987_high_6
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 21924422 - 21924092
Alignment:
| Q |
11 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataat-----------------a |
93 |
Q |
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| T |
21924422 |
cagagactgatacaaaattggggggaaaatggctgcaccattcaagacatacacgaagagtaatctgctactgctgaataatgtctgaaactcctaaaca |
21924323 |
T |
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| Q |
94 |
tgtctgaaaataatttctgctctgaacgaaaacaatttctgctcgaattagcacaaactcttgccttttaatactgaaaataacttgctgtagggaaaat |
193 |
Q |
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| T |
21924322 |
tctttgcaaacaacaactgctctgaacgaaaacaatttctgctcgaattagtacaaactctttccttttaatactgaaa-taacttgctgcagaaaaaat |
21924224 |
T |
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| Q |
194 |
agagcagcacataagtattttgaatccccaaatttatttcacgacttaatgctgaaaatacatacaatctcaaaaataaaaccaatttgttgagctttaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21924223 |
agagcagcacataagtattttgaatccccaaatttatttcacaacttaatgctgaacatacatacaatctcaaaaataaaaccaatttgttgagctttaa |
21924124 |
T |
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| Q |
294 |
accattttttgaaatccagaagtaaaatcaag |
325 |
Q |
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| T |
21924123 |
tccattctttgaaatctagaagtaaaatcaag |
21924092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 6668836 - 6668785
Alignment:
| Q |
342 |
cagatacatctagatacagtagtttatcacctcaacaattgacataaatccc |
393 |
Q |
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| T |
6668836 |
cagatacatctagatacatgagttcatcacctcaacaattgacataaatccc |
6668785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 311 - 450
Target Start/End: Original strand, 39483912 - 39484051
Alignment:
| Q |
311 |
agaagtaaaatcaagagaaaaactaacatatcagatacatctagatacagtagtttatcacctcaacaattgacataaatcccatcatacaatagctgca |
410 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39483912 |
agaagtaaaatcaagagaaaaactaatatatcagatacatctagatacagtagtttatcacctcaacaattgacataaatcccatcatacaatagctgca |
39484011 |
T |
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| Q |
411 |
gcggtagactgaagtccagataacaatgacatccgaacac |
450 |
Q |
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| T |
39484012 |
acagtagactgaagtccagataacaatgacatccgaacac |
39484051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 39483770 - 39483861
Alignment:
| Q |
11 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataatatgtctgaaa |
102 |
Q |
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| T |
39483770 |
cagagactgatacaaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttaaataatatgtctgaaa |
39483861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 309
Target Start/End: Complemental strand, 26844216 - 26844085
Alignment:
| Q |
168 |
tgaaaataacttgctgtagggaaaatagagcagcacataagtattttgaatccccaaatttatttcacgacttaatgctgaaaatacatacaatctcaaa |
267 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||| || ||||||| |||||||| ||||||||| ||| |
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| T |
26844216 |
tgaaaataacttactgcagggaaaatagagcagcacataagtgttttgaatcctcaaatttagtttacgactt-ttgctgaaa----atacaatctaaaa |
26844122 |
T |
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| Q |
268 |
aataaaaccaatttgttgagctttaaaccattttttgaaatc |
309 |
Q |
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||| ||||| ||||||||||| ||||||||||||||| |
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| T |
26844121 |
aat-----taatttattgagctttaagccattttttgaaatc |
26844085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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