View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_11 (Length: 376)
Name: NF12987_low_11
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 21611579 - 21611929
Alignment:
| Q |
11 |
gagtgagaagaagaagaagaatatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtgga |
110 |
Q |
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| T |
21611579 |
gagtgaaaagaagaagaagaatatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtgga |
21611678 |
T |
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| Q |
111 |
tcctctcttcttttatttgccaatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggac |
210 |
Q |
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| T |
21611679 |
tcctctcttcttttatttgccaatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggac |
21611778 |
T |
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| Q |
211 |
gtcttttacgtcattcacattttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgttatagactcttcta |
310 |
Q |
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| T |
21611779 |
gtcttttacgtcattcacattttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgttatagactcttcta |
21611878 |
T |
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| Q |
311 |
agatagcatcaaggtacttgcataagggtttcttcttggactttattgctg |
361 |
Q |
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| T |
21611879 |
agatagcatcaaggtacttgcataagggtttcttcttggactttattgctg |
21611929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 40513662 - 40513397
Alignment:
| Q |
32 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
131 |
Q |
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| T |
40513662 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
40513563 |
T |
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| Q |
132 |
aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt |
231 |
Q |
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| T |
40513562 |
agtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatt |
40513463 |
T |
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| Q |
232 |
ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
297 |
Q |
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| T |
40513462 |
tgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
40513397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 40482767 - 40482723
Alignment:
| Q |
253 |
tatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
297 |
Q |
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| T |
40482767 |
tatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
40482723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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