View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_16 (Length: 294)
Name: NF12987_low_16
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 35053866 - 35054143
Alignment:
| Q |
1 |
tgatagttcctgatctttagggaacatgcacattgtactctatatccgtctttagtagaatattcttatgagttatttatagcagttagcatcaagtgtt |
100 |
Q |
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| T |
35053866 |
tgatagttcctaatctttagagaacatgcacattggactctatatccgtctttagtagaatattcttatgagttatttatagcagttagcatcaagtgtt |
35053965 |
T |
|
| Q |
101 |
tcaattatcgtctcatctagctatcaattcgtgatttcaattttcaaccacatgaagtttgtcaaggttattttaataattccagcaaatgatttgatat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35053966 |
tcaattatcgtctcatctaactatcaattcgtgatttcaattttcaaccacatgaagtttgtcaaggttattttaataattccagcaaatgatttgatat |
35054065 |
T |
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| Q |
201 |
gtttaaagtcggtga---nnnnnnnnnaggggaggtaattaaaattattgaaatattgataaaatatttacgtatata |
275 |
Q |
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| T |
35054066 |
gtttaaagtcggtgattttttttttttaggggaggtaattaaaattattgaaatattgataaaatatttacgtatata |
35054143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 34355067 - 34354947
Alignment:
| Q |
159 |
ttgtcaaggttattttaataattccagcaaatgatttgatatgtttaaagtcggtg----annnnnnnnnaggggaggtaattaaaattattgaaatatt |
254 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
34355067 |
ttgtcaaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgattaatttttttttaggggaggtaattaaaattattgaaatatt |
34354968 |
T |
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| Q |
255 |
gataaaatatttacgtatata |
275 |
Q |
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|| |||||||||||||||||| |
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| T |
34354967 |
gagaaaatatttacgtatata |
34354947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 34355117 - 34355069
Alignment:
| Q |
88 |
agcatcaagtgtttcaattatcgtctcatctagctatcaattcgtgatt |
136 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
34355117 |
agcagcaagtgtttcaattatcgtctcatttagctatcaatttgtgatt |
34355069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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