View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_17 (Length: 290)
Name: NF12987_low_17
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 5 - 290
Target Start/End: Original strand, 28497199 - 28497484
Alignment:
| Q |
5 |
ggggggtagatgggcaaaggtggcattggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttagnnnnnnnnnnnnn |
104 |
Q |
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| T |
28497199 |
ggggggtagatgggcaaaggtggcgttggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttag-tttttttttttt |
28497297 |
T |
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| Q |
105 |
nngcaagattatgttgtggataaatgagattgaactcttaactctggtgatggttatttggtaaaggatggttatcaaatcatcacgcaaactaaacaat |
204 |
Q |
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| T |
28497298 |
ttgcaagattaatttgtggataaatgagattgaactcttaactccggtgatggttacttgataaaggatggttatcaaatcatcacgcaaactgaacaac |
28497397 |
T |
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| Q |
205 |
ctcataatgata-nnnnnnnnnnggagtgactaaaaaagtagtgtcnnnnnnntttgtccaataaaattaaagactatgtattattt |
290 |
Q |
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| T |
28497398 |
ctcataatgatatatatttttttggagtgactaaaaaagtagtgtcaaaaaaatttgtccaataaaattaaagactatgtattattt |
28497484 |
T |
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Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 28496450 - 28496663
Alignment:
| Q |
1 |
gtttggggggtagatgggcaaaggtggcattggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttagnnnnnnnnn |
100 |
Q |
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| T |
28496450 |
gtttggggggtagatgggcaaaggtgtcgttggagaaggtgtatgtttgcttcggagaaagagcagttgggctagcgtgtttctcgtttag--atattta |
28496547 |
T |
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| Q |
101 |
nnnnnngcaagattatgttgtggataaatgagattgaactcttaactctggtgatggttatttggtaaaggatggttatcaaatcatcacgcaaactaaa |
200 |
Q |
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| T |
28496548 |
ttttttgcaagattatgttgtggataaatgagtttggactcttaattctcttgatggttacttggtaaaggatggttataaaatcatcacacaaactgag |
28496647 |
T |
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| Q |
201 |
caatctcataatgata |
216 |
Q |
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| T |
28496648 |
caacctcataatgata |
28496663 |
T |
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