View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_18 (Length: 242)
Name: NF12987_low_18
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35053852 - 35053618
Alignment:
| Q |
1 |
tattatcttctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaacattcgatgctttgtgtttgtatatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
35053852 |
tattatcttctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaccattcgatgctttgtgtttgtatctgt |
35053753 |
T |
|
| Q |
101 |
gaatttgggaatctgaatggtcatgacgctaagtactcttgaattcttcataatatattttg-caaa-----atgaaggccacatttcatgcctttgaag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||| |
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| T |
35053752 |
gaatttgggaatctgaatggtcatgacgctaagtactcttgaattcttcataatatattttgtcaaaaatatatggaggccacatttcatgcctctgaag |
35053653 |
T |
|
| Q |
195 |
tttctgagtgagcatattcttagatgagatgaaag |
229 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35053652 |
tttctgagtgagcatattcttagatgagatgaaag |
35053618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34355220 - 34355444
Alignment:
| Q |
1 |
tattatcttctgtcactcaaataaataaaagtttacatgttgaactcttggggcacggagataattccattaacattcgatgctttgtgtttgtatatgt |
100 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| || |
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| T |
34355220 |
tattatctgctgtcactcaaat----aaaagtttacatgttgaactcttgggacacgaagataattccattaacattcgatgctttgcgtttgtatcagt |
34355315 |
T |
|
| Q |
101 |
gaatttgggaatctgaatggtcatgacgctaagtactcttgaattcttcataatatattttgcaaaatgaaggccacatttcatgcctttgaagtttctg |
200 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34355316 |
aaattcgggactctgaatggtcatgacgctaagtactcttgagttcttcataataaattttgcaaagtgaaggccacatttcatgcctttgaagtttctg |
34355415 |
T |
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| Q |
201 |
agtgagcatattcttagatgagatgaaag |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34355416 |
agtgagcatattcttagatgagatgaaag |
34355444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 11378490 - 11378434
Alignment:
| Q |
134 |
tactcttgaattcttcataatatattttgcaaaatgaaggccacatttcatgccttt |
190 |
Q |
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|||| ||| |||||||| ||||||||||||||| |||| | |||| ||||||||||| |
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| T |
11378490 |
tacttttgcattcttcaaaatatattttgcaaactgaaagtcacaattcatgccttt |
11378434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 49972939 - 49973097
Alignment:
| Q |
17 |
tcaaataaataaaagtttacatgt---tgaactcttggggcacggagataattccattaacattcgatgctttgtgtttgtatatgtgaatttgggaatc |
113 |
Q |
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|||||||||||||||||||||||| |||| |||| ||||| |||||||||| || |||| | ||||||| |||||| | |||||||| | || |
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| T |
49972939 |
tcaaataaataaaagtttacatgtggttgaattctttaggcacaaagataattcctttttcatttggagctttgtagttgtatctaggaatttggcactc |
49973038 |
T |
|
| Q |
114 |
tgaatggtcatgacgctaagtactcttgaattcttcataatatattttgcaaaatgaag |
172 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49973039 |
tgaattttcatggcgctaagtactcttgaattcttcataatatattttgcaaagtgaag |
49973097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 49856572 - 49856642
Alignment:
| Q |
102 |
aatttgggaatctgaatggtcatgacgctaagtactcttgaattcttcataatatattttgcaaaatgaag |
172 |
Q |
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||||||| | ||||||| |||||| ||| |||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
49856572 |
aatttggcactctgaattttcatgatgcttagtactcttgaattctgcatgatatattttgcaaattgaag |
49856642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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