View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12987_low_4 (Length: 615)

Name: NF12987_low_4
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12987_low_4
NF12987_low_4
[»] chr7 (14 HSPs)
chr7 (19-610)||(5071393-5071984)
chr7 (26-435)||(16881670-16882090)
chr7 (26-435)||(24264247-24264667)
chr7 (26-433)||(21985662-21986080)
chr7 (135-382)||(21641543-21641800)
chr7 (139-435)||(12404827-12405133)
chr7 (26-433)||(18410400-18410818)
chr7 (286-433)||(9188071-9188219)
chr7 (302-400)||(24272859-24272962)
chr7 (342-435)||(3321917-3322010)
chr7 (342-435)||(7073010-7073103)
chr7 (344-435)||(25403616-25403707)
chr7 (344-435)||(25408373-25408464)
chr7 (193-245)||(9188269-9188321)
[»] chr8 (12 HSPs)
chr8 (26-435)||(35742132-35742552)
chr8 (26-400)||(26401309-26401694)
chr8 (26-435)||(10687188-10687608)
chr8 (26-382)||(18868647-18869014)
chr8 (26-382)||(33035910-33036277)
chr8 (26-433)||(26298125-26298543)
chr8 (26-433)||(26311382-26311800)
chr8 (342-435)||(4814355-4814448)
chr8 (342-435)||(28893723-28893816)
chr8 (302-433)||(28330856-28330988)
chr8 (342-435)||(16754389-16754482)
chr8 (342-435)||(21040389-21040482)
[»] chr3 (14 HSPs)
chr3 (26-435)||(32477083-32477503)
chr3 (26-435)||(8513837-8514257)
chr3 (26-400)||(1307614-1307999)
chr3 (26-435)||(22171232-22171652)
chr3 (190-400)||(3326485-3326705)
chr3 (135-435)||(2675144-2675454)
chr3 (190-382)||(16256977-16257179)
chr3 (342-435)||(54191467-54191560)
chr3 (342-435)||(10095935-10096028)
chr3 (342-435)||(10202821-10202914)
chr3 (342-435)||(10899968-10900061)
chr3 (26-87)||(3326772-3326833)
chr3 (342-435)||(16460423-16460516)
chr3 (351-435)||(10609911-10609995)
[»] chr5 (12 HSPs)
chr5 (26-382)||(33769782-33770149)
chr5 (26-382)||(31399969-31400336)
chr5 (135-435)||(37559517-37559827)
chr5 (310-433)||(24558510-24558634)
chr5 (310-433)||(24599542-24599666)
chr5 (135-435)||(28805646-28805956)
chr5 (190-435)||(27446731-27446986)
chr5 (26-382)||(28833802-28834169)
chr5 (190-435)||(43594029-43594284)
chr5 (190-435)||(43626823-43627078)
chr5 (342-435)||(25450716-25450809)
chr5 (26-71)||(28806021-28806066)
[»] chr4 (11 HSPs)
chr4 (26-433)||(3791059-3791477)
chr4 (26-435)||(18857319-18857739)
chr4 (286-433)||(16626918-16627066)
chr4 (302-433)||(5144937-5145069)
chr4 (286-435)||(9227325-9227475)
chr4 (187-245)||(16627116-16627174)
chr4 (342-435)||(15315276-15315369)
chr4 (342-435)||(4568302-4568395)
chr4 (26-247)||(5144653-5144875)
chr4 (26-71)||(9227631-9227676)
chr4 (342-435)||(16637120-16637213)
[»] chr2 (13 HSPs)
chr2 (135-433)||(39486137-39486445)
chr2 (191-433)||(39484666-39484918)
chr2 (26-382)||(19346021-19346388)
chr2 (342-435)||(20051890-20051983)
chr2 (26-245)||(31057702-31057921)
chr2 (302-382)||(31057987-31058068)
chr2 (186-245)||(31134708-31134767)
chr2 (342-435)||(17935043-17935136)
chr2 (302-433)||(39685208-39685340)
chr2 (342-433)||(2739166-2739257)
chr2 (348-399)||(31134544-31134595)
chr2 (342-435)||(22714363-22714456)
chr2 (26-71)||(39486510-39486555)
[»] scaffold0259 (1 HSPs)
scaffold0259 (26-382)||(362-729)
[»] scaffold0197 (1 HSPs)
scaffold0197 (26-435)||(17233-17653)
[»] chr1 (6 HSPs)
chr1 (135-382)||(41395104-41395361)
chr1 (190-400)||(47701996-47702216)
chr1 (302-400)||(13599896-13599995)
chr1 (342-435)||(2396384-2396477)
chr1 (342-435)||(9524687-9524780)
chr1 (191-245)||(47101131-47101185)
[»] chr6 (8 HSPs)
chr6 (135-435)||(14740496-14740806)
chr6 (26-382)||(33334053-33334420)
chr6 (337-433)||(24434240-24434336)
chr6 (342-435)||(13881698-13881791)
chr6 (342-435)||(17691981-17692074)
chr6 (342-435)||(35203192-35203285)
chr6 (342-435)||(25944628-25944721)
chr6 (26-71)||(14740870-14740915)
[»] scaffold0078 (1 HSPs)
scaffold0078 (155-433)||(33912-34200)
[»] scaffold0006 (1 HSPs)
scaffold0006 (302-400)||(7693-7792)
[»] scaffold0209 (1 HSPs)
scaffold0209 (342-434)||(272-364)


Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Original strand, 5071393 - 5071984
Alignment:
Q  19 cttaccgatctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataatttctcatcactcttcaatacgtagacac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071393 cttaccgatctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataatttctcatcactcttcaatacgtagacac 5071492  T
Q  119 aattatcgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatattt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071493 aattatcgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatattt 5071592  T
Q  219 cttcaaaagacacatcttagacttgtcttcaccctctggttgcaccatgagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5071593 cttcaaaagacacatcttagacttgtcttcaccctctggttgcaccatgagtctctcttaaagctttccatgtaagaacatgatcttcacgtccatttgt 5071692  T
Q  319 tccaactcggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5071693 tccaactcggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgtgaaaatctcattataattaattccctcaac 5071792  T
Q  419 ctgagtacaaccctttgttggagtcttgatttgagccttgtttcttaaatttctagaaccatatgattcttaagtagtcccacaagcttctatgtttggt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  5071793 ctgagtacaaccctttgttggagtcttgatttgagccttgtttattaaatttctagaaccatctgattcttaagtagtcccacaagcttctacgtttggt 5071892  T
Q  519 tgttatctaatgaatgcattttctcatccaccgccttcaaccatttctttctttctttgctctagaatgtctccacgaaggcctttgcttct 610  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5071893 tgttatccaataaatgcattttctcatccaccgccttcaaccatttctttctttctttgctctagaatgtctccatgaaggcctttggttct 5071984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 16881670 - 16882090
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||  |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  16881670 atctcatccttgctagaacttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 16881769  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||| |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  16881770 catacccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 16881869  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  16881870 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 16881969  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||    
T  16881970 tgttccaactcaagattgaattgattcactatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccct 16882069  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  16882070 ccacttgagtgaaaccctttg 16882090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 24264667 - 24264247
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  24264667 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 24264568  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  24264567 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 24264468  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  24264467 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 24264368  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||    
T  24264367 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccct 24264268  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  24264267 ccacttgagtgaaaccctttg 24264247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 433
Target Start/End: Original strand, 21985662 - 21986080
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    |||||||||||||||||  ||| ||||||||||||| ||| |||||  |  ||||||||||| | ||||||| | |||||||| | ||| ||||||  ||    
T  21985662 atctcatccttgctagagtttgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaat 21985761  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||| |   |||||||||||| ||| || ||||||| | || |||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||| ||    
T  21985762 catacccgcttctcacaaaaccggtcttcaaaagaaattcatgaaaccgacgatagcattgcctagggctttgcttcaaccgatacaaagatttctttaa 21985861  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    || ||| | ||||||||||||||       ||| ||||||| | |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  21985862 aaaacataccttagacttgtctttcaaaaaaccttctggtttctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 21985961  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||| || || || ||||    
T  21985962 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcgatcccct 21986061  T
Q  415 caacctgagtacaaccctt 433  Q
    | || |||||  |||||||    
T  21986062 ccacttgagtgaaaccctt 21986080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 135 - 382
Target Start/End: Original strand, 21641543 - 21641800
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| |||||||||||||||||| |    
T  21641543 tctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacc 21641642  T
Q  235 ttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||||||||||||    
T  21641643 ttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatttgttccaact 21641742  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |  ||||  || ||||||| || |  ||||||||||||||||||||||||||||||||    
T  21641743 caagattgaattgattcacgatagtcataagtatccttatggaacaatgtttcaccac 21641800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 139 - 435
Target Start/End: Original strand, 12404827 - 12405133
Alignment:
Q  139 acaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttag 238  Q
    |||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||  ||||||| ||||||| |||||||||||||||||| |||||    
T  12404827 acaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggcttttcttcaacccatacaaagatttcttcaaaagacacaccttag 12404926  T
Q  239 acttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-g 328  Q
    ||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| |||||||||||||||||  |    
T  12404927 acttgtcctccataaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaag 12405026  T
Q  329 attatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaa 428  Q
    |||  || |||||||||| || |||| |||||||||||||||||||||||||||  |||| || ||||| || || || || ||||| || |||||  ||    
T  12405027 attgaattgattcacaatagccataactatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtctatcccctccacttgagtgaaa 12405126  T
Q  429 ccctttg 435  Q
    |||||||    
T  12405127 ccctttg 12405133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 433
Target Start/End: Original strand, 18410400 - 18410818
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  ||||||||||| | ||||||||   |||| || | ||| ||||||  ||    
T  18410400 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcattcttctttaacatgtacacacaagaat 18410499  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   ||||||||| || ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  18410500 catatccgcttctcacaaagccggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 18410599  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||    |||||||| ||||||    
T  18410600 aagacataccttagacttgtcgtccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcaatcttcacatccatt 18410699  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || |||||||| || || || ||||    
T  18410700 tgttccaactcaagattgaattgattcacgatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcattgtagtcgatcccct 18410799  T
Q  415 caacctgagtacaaccctt 433  Q
    | || |||||  |||||||    
T  18410800 ccacttgagtgaaaccctt 18410818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 9188219 - 9188071
Alignment:
Q  286 ccatgtaagaacatgatcttcacgtccatttgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaa 384  Q
    |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||| || |    
T  9188219 ccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcactacca 9188120  T
Q  385 gtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    |||| || |||||||| || || || ||||| || |||||  |||||||    
T  9188119 gtgaaaagatctcattgtagtcgatcccctccacttgagtgaaaccctt 9188071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 24272962 - 24272859
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-----gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatct 396  Q
    ||||||| ||||||||||||||||||     ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| ||||    
T  24272962 tcttcacatccatttgttccaactcgatcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatct 24272863  T
Q  397 catt 400  Q
    ||||    
T  24272862 catt 24272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 3321917 - 3322010
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  3321917 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 3322010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 7073103 - 7073010
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  7073103 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 7073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Complemental strand, 25403707 - 25403616
Alignment:
Q  344 aatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| || ||||||    
T  25403707 aatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaatcctttg 25403616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 435
Target Start/End: Complemental strand, 25408464 - 25408373
Alignment:
Q  344 aatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||| ||||||| |||||| ||||||||||| |||||   ||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  25408464 aatcgccataagtacccttatagaacaatgttttaccaccgatgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 25408373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 9188321 - 9188269
Alignment:
Q  193 ctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 245  Q
    ||||||||||| | ||||||| ||||||| |||||||| | ||||||||||||    
T  9188321 ctttgtttcaatccatacaaagatttctttaaaagacataccttagacttgtc 9188269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 35742132 - 35742552
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||||| ||||||||   ||||||| | ||| ||||||  ||    
T  35742132 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaataactttctcattcttcttcaacatgtacacacaagaat 35742231  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||  ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  35742232 catatccgcttctcacaaaactggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 35742331  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  35742332 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 35742431  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||    
T  35742432 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccct 35742531  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  35742532 ccacttgagtgaaaccctttg 35742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 26 - 400
Target Start/End: Complemental strand, 26401694 - 26401309
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  ||||||||||| | ||||||| | |||||||| |  || || |||  ||    
T  26401694 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatatacacgcaagaat 26401595  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||  ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||  ||||||| ||||||||||    
T  26401594 catatccgcttctcacaaaactggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaactcatacaaagatttcttcaa 26401495  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| ||||||||| |||||   | | | |||| ||| |  || ||||||||   | ||||||| ||||||    
T  26401494 aagacataccttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttcaaggtcaccttgtaagaaagcggtcttcacatccatt 26401395  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  26401394 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaatatctcatt 26401309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 10687608 - 10687188
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  10687608 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaat 10687509  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  10687508 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 10687409  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  10687408 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 10687309  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||    
T  10687308 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccct 10687209  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  10687208 ccacttgagtgaaaccctttg 10687188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 18869014 - 18868647
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  18869014 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaat 18868915  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  18868914 catatccccttctcacaaaaccggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacctatacaaagatttcttcaa 18868815  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| ||| |||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  18868814 aagacacaccttggacttgtcctccacagaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 18868715  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||    
T  18868714 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccac 18868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 33036277 - 33035910
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  ||||||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  33036277 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaat 33036178  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  33036177 catatccgcttctcacaaaaccggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 33036078  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| ||| |||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  33036077 aagacacaccttggacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 33035978  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||    
T  33035977 tgttccaactcaagattgaattgattcacgatagccataagtatccttatggaacaatgtttcaccac 33035910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 433
Target Start/End: Original strand, 26298125 - 26298543
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  ||||||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  26298125 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaat 26298224  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||  ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  26298225 catatccgcttctcacaaaactggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 26298324  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| |  |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  26298325 aagacataccttagacttgtcctccacaaaacctttcggttgctccatgtagattgtctctttaaggtcaccatgtaagaaagcggtcttcacatccatt 26298424  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || |||||||| || || || ||||    
T  26298425 tgttccaactcaagattgaattgattcacgatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcattgtagtcgatcccct 26298524  T
Q  415 caacctgagtacaaccctt 433  Q
    | || |||||  |||||||    
T  26298525 ccacttgagtgaaaccctt 26298543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 433
Target Start/End: Original strand, 26311382 - 26311800
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  ||||||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  26311382 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcactcttcttcaacatgtacacacaagaat 26311481  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||  ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  26311482 catatccgcttctcacaaaactggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 26311581  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| |  |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  26311582 aagacataccttagacttgtcctccacaaaacctttcggttgctccatgtagattgtctctttaaggtcaccatgtaagaaagcggtcttcacatccatt 26311681  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || |||||||| || || || ||||    
T  26311682 tgttccaactcaagattgaattgattcacgatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcattgtagtcgatcccct 26311781  T
Q  415 caacctgagtacaaccctt 433  Q
    | || |||||  |||||||    
T  26311782 ccacttgagtgaaaccctt 26311800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 4814355 - 4814448
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  4814355 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 4814448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 28893816 - 28893723
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  28893816 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 28893723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 433
Target Start/End: Complemental strand, 28330988 - 28330856
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    ||||||| ||||||||||| |||||  |||||||    || |||||||| ||||||| |||||| ||||||||||| || ||  |||| || || |||||    
T  28330988 tcttcacatccatttgttctaactcaagattatacatgttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcatt 28330889  T
Q  401 ataatcaattccctcaacctgagtacaaccctt 433  Q
     |||||||| || || ||||||||| |||||||    
T  28330888 gtaatcaatcccttccacctgagtaaaaccctt 28330856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 16754389 - 16754482
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| || ||  |||| || || ||||| |||||||| || || ||||||||| | |||||||    
T  16754389 acaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaagccctttg 16754482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 21040482 - 21040389
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||| | ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || | ||||||| |||||||||    
T  21040482 acaatctccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccaactgagtaaaaccctttg 21040389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 32477083 - 32477503
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  32477083 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 32477182  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  32477183 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 32477282  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| ||||||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  32477283 aagacacaccttagacttgtcctctacaaaaccttctggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 32477382  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||    
T  32477383 tgttccaactcaagattgaattgattcactatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccct 32477482  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  32477483 ccacttgagtgaaaccctttg 32477503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 8513837 - 8514257
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | |||||| |   ||||||| | ||| ||||||  ||    
T  8513837 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcgttcttcttcaacatgtacacacaagaat 8513936  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || | |||||| ||||||| ||||||| ||||||||||    
T  8513937 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagtgctttgcttcaacccatacaaagatttcttcaa 8514036  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| ||||||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  8514037 aagacacaccttagacttgtcctctacaaaaccttctggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 8514136  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||    
T  8514137 tgttccaactcaagattgaattgattcactatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccct 8514236  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  8514237 ccacttgagtgaaaccctttg 8514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 26 - 400
Target Start/End: Original strand, 1307614 - 1307999
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaat-aatttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  ||||||||||| |||||||||    ||||||| | ||| ||| ||  ||    
T  1307614 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaaggtagagaatgaatttctcactcttcttcaacatgtacacataagaat 1307713  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  1307714 catatccgcttctcacaaaaccggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 1307813  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| ||||||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  1307814 aagacataccttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttgaaggtcaccatgtaagaaagcggtcttcacatccatt 1307913  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    |||||||||||  ||||  || ||||||| || || ||||||||||||||||||||||||||||||||  |||| || ||||||||    
T  1307914 tgttccaactcaagattgaattgattcacgatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcatt 1307999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 22171652 - 22171232
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  || |||||||||| |||||||    ||||||| | ||| ||||||  ||    
T  22171652 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaagatagagaataaatttctcactcttcttcaacatgtacacacaagaat 22171553  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| |  ||||||| | ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  22171552 catatccgcttctcacaaaaccggtctttaaaagaaattcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 22171453  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  22171452 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 22171353  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||  |||| |||||||| || || || || ||||    
T  22171352 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaaaatctcgttgtagtcgatcccct 22171253  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  22171252 ccacttgagtgaaaccctttg 22171232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 400
Target Start/End: Complemental strand, 3326705 - 3326485
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| ||||||||||||||||   |||||| ||||||||      ||| ||||||||| |||||   | | | |||| ||    
T  3326705 gggctttgcttcaacccatacaaagatttcttcaaaagacattccttagatttgtcttctacaaaaccttctggttgctccatgtagattgtctcttcaa 3326606  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| || ||| |||||||||||||||||||||||||    
T  3326605 ggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagcgatatgtatccttatggaacaatgtttcac 3326506  T
Q  380 cacaagtgagaaaatctcatt 400  Q
    |||  || |||| ||||||||    
T  3326505 caccggtaagaagatctcatt 3326485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 135 - 435
Target Start/End: Complemental strand, 2675454 - 2675144
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  ||  ||||||| ||||||| ||||||| |||||||||||||||||| |    
T  2675454 tctcacaaaaccggtcttcaaaagaaactcatcaaaccgaccataccattgcctaaggctttgcttcaacccatacaaagatttcttcaaaagacacacc 2675355  T
Q  235 ttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||||||||||||    
T  2675354 ttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatttgttccaact 2675255  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagt 424  Q
    |  |||   || ||||||| || || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||| || |||||    
T  2675254 caagatcgaattgattcactatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccctccacttgagt 2675155  T
Q  425 acaaccctttg 435  Q
      |||||||||    
T  2675154 gaaaccctttg 2675144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 190 - 382
Target Start/End: Original strand, 16256977 - 16257179
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| |||||||||||||||| | |||||||||||| ||      ||| ||||||||| |||||   | | | |||| ||    
T  16256977 gggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttcaa 16257076  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| |  |||||||||||||||| ||||||||||||    
T  16257077 ggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagtcataagtatccttatggtacaatgtttcac 16257176  T
Q  380 cac 382  Q
    |||    
T  16257177 cac 16257179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 54191560 - 54191467
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| |||||||||||||||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  54191560 acaatcgccataagtacccttatagaacaatgtttcaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 54191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 10095935 - 10096028
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  10095935 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 10096028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 10202821 - 10202914
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  10202821 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 10202914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 10900061 - 10899968
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  10900061 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 10899968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 3326833 - 3326772
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaat 87  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  |||||||||||    
T  3326833 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaat 3326772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 16460516 - 16460423
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| || ||  |||| || || ||||| ||||||||  | || ||||||||| |||||||||    
T  16460516 acaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaatcacttccacctgagtaaaaccctttg 16460423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 10609911 - 10609995
Alignment:
Q  351 ataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| || ||||||    
T  10609911 ataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaatcctttg 10609995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 33769782 - 33770149
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  33769782 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 33769881  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  33769882 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 33769981  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  33769982 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 33770081  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||    
T  33770082 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccac 33770149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 31400336 - 31399969
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  31400336 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 31400237  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  31400236 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 31400137  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  31400136 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 31400037  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  |||   || ||||||| || || ||||||||||||||||||||||| ||||||||    
T  31400036 tgttccaactcaagatcgaattgattcactatagccataagtatccttatggaacaatgcttcaccac 31399969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 435
Target Start/End: Complemental strand, 37559827 - 37559517
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| |||||||||||||||||  |    
T  37559827 tctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacgcc 37559728  T
Q  235 ttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| ||||||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||||||||||||    
T  37559727 ttagacttgtcctccacaaaaccttctggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatttgttccaact 37559628  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagt 424  Q
    |  ||||  ||  ||||||||| || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||| || |||||    
T  37559627 caagattgaattaattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccctccacttgagt 37559528  T
Q  425 acaaccctttg 435  Q
      |||||||||    
T  37559527 gaaaccctttg 37559517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 433
Target Start/End: Complemental strand, 24558634 - 24558510
Alignment:
Q  310 tccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaa 408  Q
    |||||||||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||| || ||||    
T  24558634 tccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcaa 24558535  T
Q  409 ttccctcaacctgagtacaaccctt 433  Q
    | ||||| || |||||  |||||||    
T  24558534 tcccctccacttgagtgaaaccctt 24558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 433
Target Start/End: Complemental strand, 24599666 - 24599542
Alignment:
Q  310 tccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaa 408  Q
    |||||||||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||| || ||||    
T  24599666 tccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcaa 24599567  T
Q  409 ttccctcaacctgagtacaaccctt 433  Q
    | ||||| || |||||  |||||||    
T  24599566 tcccctccacttgagtgaaaccctt 24599542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 135 - 435
Target Start/End: Complemental strand, 28805956 - 28805646
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||| ||| || |||||||||  |||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||||||| || |    
T  28805956 tctcacaaaaccggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacgcacc 28805857  T
Q  235 ttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | | ||||| ||||||||||||||||    
T  28805856 ttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtattcacatccatttgttccaact 28805757  T
Q  326 cg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagt 424  Q
    |  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||| || |||||    
T  28805756 caagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccctccacttgagt 28805657  T
Q  425 acaaccctttg 435  Q
      |||||||||    
T  28805656 gaaaccctttg 28805646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 190 - 435
Target Start/End: Original strand, 27446731 - 27446986
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| ||||||| |||||||||| |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||    
T  27446731 gggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 27446830  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| |||||    
T  27446831 ggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcac 27446930  T
Q  380 cacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||  |||| || ||||| || || || || ||||| || |||||  |||||||||    
T  27446931 caccggtgaaaagatctcgttgtagtcgatcccctccacttgagtgaaaccctttg 27446986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 28833802 - 28834169
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    |||||||||||| ||||  ||| ||||||||||||| ||| |||||| |  ||||||||||| | ||||||| | |||||||| | ||| ||||||  ||    
T  28833802 atctcatccttgttagagtttgccatcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaat 28833901  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||| | ||| || ||||||| | ||||||| ||| |  |||||  || |||||||| ||||||| ||||||| ||||||||||    
T  28833902 catatccgcttctcacaaaatcggtcttcaaaagaaattcatcaaaccgacgatatcattgcctagggctttgcttcaacccatacaaagatttcttcaa 28834001  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||| | | |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| || |||    
T  28834002 aagatataccttagacttgtcatccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatctatt 28834101  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||| |   ||||  || |||||||||| || ||||||||||||||||||||||||||||||||    
T  28834102 tgttccaaattaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccac 28834169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 435
Target Start/End: Original strand, 43594029 - 43594284
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| ||||||| |||||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||    
T  43594029 gggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 43594128  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| |  |||| |||||||||||||||||| |||||    
T  43594129 ggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagtcataaatatccttatggaacaatgcttcac 43594228  T
Q  380 cacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||  |||| || ||||| || || || || ||||| || |||||  |||||||||    
T  43594229 caccggtgaaaagatctcgttgtagtcgatcccctccacttgagtgaaaccctttg 43594284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 435
Target Start/End: Original strand, 43626823 - 43627078
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| ||||||| |||||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||    
T  43626823 gggctttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaa 43626922  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| |  |||| |||||||||||||||||| |||||    
T  43626923 ggtcaccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagtcataaatatccttatggaacaatgcttcac 43627022  T
Q  380 cacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||  |||| || ||||| || || || || ||||| || |||||  |||||||||    
T  43627023 caccggtgaaaagatctcgttgtagtcgatcccctccacttgagtgaaaccctttg 43627078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 25450809 - 25450716
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || || || |||||||| || || |||| |||| |||||||||    
T  25450809 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcgttgtaatcaatcccttccacctaagtaaaaccctttg 25450716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 28806066 - 28806021
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatata 71  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  28806066 atctcatccttgctagagcttgccatcaagatatcatccacatata 28806021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 26 - 433
Target Start/End: Complemental strand, 3791477 - 3791059
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  ||||||||||| | ||||||| | |||||||| | ||| ||||||  ||    
T  3791477 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaagaat 3791378  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   ||| |||||||| ||| || ||||||| | ||||||| ||| |   ||||  || |||||||  ||||||| ||||||| ||||||||||    
T  3791377 catatccgcttcttacaaaaccggtcttcaaaagaaattcatcaaaccgacgataccattgcctagggctttacttcaacccatacaaagatttcttcaa 3791278  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||| | |||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||| ||   | ||||||| ||||||    
T  3791277 aagacataccttagacttgtcctccaaaaaaccttccggttgctccatgtagattttctcttcaaggtcaccatgtaacaaagcggtcttcacatccatt 3791178  T
Q  316 tgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||| || || || ||||    
T  3791177 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtactcgatcccct 3791078  T
Q  415 caacctgagtacaaccctt 433  Q
    | || |||||  |||||||    
T  3791077 ccacttgagtgaaaccctt 3791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 435
Target Start/End: Original strand, 18857319 - 18857739
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  18857319 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaat 18857418  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  18857419 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 18857518  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  18857519 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 18857618  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  |||| || ||||| || || || || ||||    
T  18857619 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgaaaagatctcgttgtagtcgatcccct 18857718  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  18857719 ccacttgagtgaaaccctttg 18857739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 16627066 - 16626918
Alignment:
Q  286 ccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaa 384  Q
    ||||||||||| | | ||||||| |||||||||||||||||  ||||  || |||||||||| || |||||||||||||||||||||||||||||||       
T  16627066 ccatgtaagaaaacggtcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccatcg 16626967  T
Q  385 gtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    ||||||| |||||||| || || || ||||| || |||||  |||||||    
T  16626966 gtgagaagatctcattgtagtccatcccctccacttgagtgaaaccctt 16626918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 433
Target Start/End: Original strand, 5144937 - 5145069
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    ||||||| ||||||||||| |||||  ||||  || ||||||||||  | ||||||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  5144937 tcttcacatccatttgttcaaactcaagattgaattgattcacaataaccataagtatcgttatggaacaatgtttcaccaccggtgagaagatctcatt 5145036  T
Q  401 ataatcaattccctcaacctgagtacaaccctt 433  Q
     || ||||| ||||| || |||||  |||||||    
T  5145037 gtagtcaatcccctccacttgagtgaaaccctt 5145069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 435
Target Start/End: Complemental strand, 9227475 - 9227325
Alignment:
Q  286 ccatgtaagaacatgatcttcacgtccatttgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaa 384  Q
    |||||||||||   | ||||||| |||||||||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||      
T  9227475 ccatgtaagaaagcggtcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccactg 9227376  T
Q  385 gtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||| || ||||| || || || || ||||| || |||||  |||||||||    
T  9227375 gtgaaaagatctcgttgtagtcgatcccctccacttgagtgaaaccctttg 9227325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 16627174 - 16627116
Alignment:
Q  187 cttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 245  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||    
T  16627174 cttgggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgtc 16627116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 15315369 - 15315276
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| || ||||| || |||||||||||| |||||||||    
T  15315369 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtagtcaatcccttcaacctgagtaaaaccctttg 15315276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 4568395 - 4568302
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| | |||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  4568395 acaatcgccataagtacccttatagaacaatgttttatcaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 4568302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 5144653 - 5144875
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||| ||||| |||| ||||||||||||| ||| |||||  |  ||||||||||| | ||||||| |  ||||||| | ||| ||||||  ||    
T  5144653 atctcatccttcctagagcttgccatcaagatatcatccacatataaaagaaggtagagaatgactttctcacccttcttcaacatgtacacacaagaat 5144752  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| | | || ||||||| | ||||||||||  |   ||||  |  ||| |||| ||||||| ||||||| ||||||| ||    
T  5144753 cttatccgcttctcacaaaaccgggcttcaaaagaaattcatcaaactgatgataccattgcccagggatttgcttcaacccatacaaagatttctttaa 5144852  T
Q  225 aagacacatcttagacttgtctt 247  Q
    |||||| | ||||||||||||||    
T  5144853 aagacataccttagacttgtctt 5144875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 9227676 - 9227631
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatata 71  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  9227676 atctcatccttgctagagcttgccatcaagatatcatccacatata 9227631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 16637213 - 16637120
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||   ||| || || ||||| |||||||| || || || |||||| |||||||||    
T  16637213 acaatcgccataagtacccttattgaacaatgttttaccaccgctgaaaagatttcattgtaatcaatcccttccacatgagtaaaaccctttg 16637120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 135 - 433
Target Start/End: Complemental strand, 39486445 - 39486137
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||||||| || ||||||| | ||||||| ||| |  ||||| ||| |||||||| ||||||| ||||||| || ||||||||||||| |||    
T  39486445 tctcacaaaaccagtcttcaaaagaaattcatcaaaccgacgatatcattgtctagggctttgcttcaacccatacaaagatatcttcaaaagacatatc 39486346  T
Q  235 ttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| ||||||| | ||||   || | | |||| ||| |   ||||||||||   | ||||||| ||||||| ||||||||    
T  39486345 ttagacttgtcctccacaaaaccttctggttactccatgtagattgtctcttcaaggtcaacatgtaagaaagcggtcttcacatccatttcttccaact 39486246  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagt 424  Q
    |  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||| || || || ||||| || |||||    
T  39486245 caagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattgtagtcgatcccctccacttgagt 39486146  T
Q  425 acaaccctt 433  Q
      |||||||    
T  39486145 gaaaccctt 39486137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 191 - 433
Target Start/End: Original strand, 39484666 - 39484918
Alignment:
Q  191 ggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaag 281  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||| ||      ||| || |||||| |||||   | | | |||| |||    
T  39484666 ggctttgcttcaacccatacaaagatttcttcaaaagacacaccttagacttgtcctctacaaaaccttccggttgctccatgtagattgtctcttcaag 39484765  T
Q  282 ctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcacc 380  Q
     || |||||||||||   | ||||||| ||||||||||| |||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||    
T  39484766 gttaccatgtaagaaagcggtcttcacatccatttgttctaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcacc 39484865  T
Q  381 acaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    ||  ||||||| |||||||| || || || ||||| || |||||  |||||||    
T  39484866 accggtgagaatatctcattgtagtcgatcccctccacttgagtgaaaccctt 39484918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 26 - 382
Target Start/End: Original strand, 19346021 - 19346388
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  19346021 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 19346120  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| |||| |||||    
T  19346121 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagattttttcaa 19346220  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||  ||||   || | | |||| ||| |  |||| ||||||   | ||||||| ||||||    
T  19346221 aagacacaccttagacttgtcctccacaaaaccttccggttgttccatgtagattgtctcttcaaggtcaccatataagaaagcggtcttcacatccatt 19346320  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||    
T  19346321 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccac 19346388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 20051890 - 20051983
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || |||||||||||||| || || ||||||||| |||||||||    
T  20051890 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattataatcaatcccttccacctgagtaaaaccctttg 20051983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 31057702 - 31057921
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataatttctcatcactcttcaatacgtagacacaattatc 125  Q
    |||||||| |||||||| |||| ||||||||||||| ||| |||||  |  ||||||||||| | ||  || | |||||||| | ||| ||||||  |||    
T  31057702 atctcatcgttgctagagcttgccatcaagatatcatccacatataaaagaaggtagagaatgactttccacccctcttcaacatgtacacacaagaatc 31057801  T
Q  126 gtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaa 225  Q
     ||  |   |||||||||||| ||| || ||||||| | ||||||| ||| |   ||||| || ||| |||| ||||||  ||||||| |||||||||||    
T  31057802 atatccgcttctcacaaaaccggtcttcaaaagaaattcatcaaaccgacgataccatttcctagggttttgcttcaactcatacaaagatttcttcaaa 31057901  T
Q  226 agacacatcttagacttgtc 245  Q
    ||||| | ||||||||||||    
T  31057902 agacataccttagacttgtc 31057921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 31057987 - 31058068
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    ||||||| ||||||||||||||||   ||||  || |||||||||| |  ||||||||||||||||||||||||||||||||    
T  31057987 tcttcacatccatttgttccaacttaagattgaattgattcacaatggtcataagtatccttatggaacaatgtttcaccac 31058068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 31134767 - 31134708
Alignment:
Q  186 tcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 245  Q
    |||||| ||||||||||||  ||||||  |||||||||||||||||||||| ||||||||    
T  31134767 tcttggactttgtttcaacacatacaacaatttcttcaaaagacacatcttggacttgtc 31134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 17935136 - 17935043
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| || ||||| || || ||||||||| |||||||||    
T  17935136 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtagtcaatcccttccacctgagtaaaaccctttg 17935043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 433
Target Start/End: Complemental strand, 39685340 - 39685208
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    ||||||| ||||||||||| |||||  |||||||    || |||||||| ||||||| |||||| ||||||||||| || ||  |||| || || |||||    
T  39685340 tcttcacatccatttgttctaactcaagattatacatgttaacaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcatt 39685241  T
Q  401 ataatcaattccctcaacctgagtacaaccctt 433  Q
     |||||||| || || ||||||||| |||||||    
T  39685240 gtaatcaatcccttccacctgagtaaaaccctt 39685208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 433
Target Start/End: Complemental strand, 2739257 - 2739166
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    |||||||| ||||||| |||||| ||||||||||| ||||   |||| || || ||||| |||||||| || || ||||||||| |||||||    
T  2739257 acaatcgccataagtacccttatagaacaatgttttaccagcggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctt 2739166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 31134595 - 31134544
Alignment:
Q  348 gctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcat 399  Q
    |||||||||| ||||||||||||||| ||||||||| |||| || |||||||    
T  31134595 gctataagtaaccttatggaacaatgcttcaccacatgtgaaaagatctcat 31134544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 22714363 - 22714456
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| || ||  |||| || || ||||| ||||||||  | || ||||||||| |||||||||    
T  22714363 acaatcgccataagtacccttatagaacaatgttttactaccggtgaaaagatttcattgtaatcaatcacttccacctgagtaaaaccctttg 22714456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 39486555 - 39486510
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatata 71  Q
    |||||||||||||||||  ||||||||||||||||| ||| |||||    
T  39486555 atctcatccttgctagagtttgtcatcaagatatcatccacatata 39486510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 729 - 362
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  729 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 630  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || |||||||||  |||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  629 catatccgcttctcacaaaaccggtcttcaaaagaaactcgtcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 530  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||||||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  529 aagacacaccttagacttgtcttccacaaaaccttcaggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 430  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||||||||||||    
T  429 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcaccac 362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 435
Target Start/End: Complemental strand, 17653 - 17233
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||  |  || |||||||| | |||||||    ||||||| | ||| ||||||  ||    
T  17653 atctcatccttgctagagcttgccatcaagatatcatccacatataaaagaagatagagaatgactttctcactcttcttcaacatgtacacacaagaat 17554  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| ||||||||||    
T  17553 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaa 17454  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||    
T  17453 aagacacaccttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatt 17354  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccct 414  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||    
T  17353 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccct 17254  T
Q  415 caacctgagtacaaccctttg 435  Q
    | || |||||  |||||||||    
T  17253 ccacttgagtgaaaccctttg 17233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 135 - 382
Target Start/End: Original strand, 41395104 - 41395361
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||| ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| |||||||||||||||||| |    
T  41395104 tctcacaaaaccggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttggttcaacccatacaaagatttcttcaaaagacacacc 41395203  T
Q  235 ttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| || |||||| ||||   || | | |||| ||| |  |||||||||||   | ||||||| ||||||||||||||||    
T  41395204 ttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtgaccatgtaagaaagcggtcttcacatccatttgttccaact 41395303  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||    
T  41395304 caagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccac 41395361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 190 - 400
Target Start/End: Complemental strand, 47702216 - 47701996
Alignment:
Q  190 gggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaa 280  Q
    |||||||| ||||||| ||||||| |||||||||||||||| | |||||||||||  ||      ||| ||||||||| |||||   | | | |||| ||    
T  47702216 gggctttgcttcaacccatacaaagatttcttcaaaagacataccttagacttgttctccacaaaaccttctggttgctccatgtagattgtctcttcaa 47702117  T
Q  281 gctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcac 379  Q
    | |  |||||||||||   | | ||||| |||||||||||||||||  ||||  || |||||||||| || |||||||||||||||||||||||||||||    
T  47702116 ggtcaccatgtaagaaagcggtattcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgtttcac 47702017  T
Q  380 cacaagtgagaaaatctcatt 400  Q
    |||  ||||||| ||||||||    
T  47702016 caccggtgagaagatctcatt 47701996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 13599896 - 13599995
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    ||||||| |||||||||||||||||  ||||  || |||||||||| || |||||||||||||||||| |||||||||||||  ||||||| ||||||||    
T  13599896 tcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaataatgtttcaccactggtgagaagatctcatt 13599995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 2396384 - 2396477
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  ||||||| || ||||| |||| ||| || || ||||||||| |||||||||    
T  2396384 acaatcgccataagtacccttatagaacaatgttttaccaccggtgagaagatttcattgtaataaatcccttccacctgagtaaaaccctttg 2396477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 9524780 - 9524687
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  9524780 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 9524687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 47101185 - 47101131
Alignment:
Q  191 ggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtc 245  Q
    ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||    
T  47101185 ggctttgcttcaacctatacaaagatttcttcaaaagacataccttagacttgtc 47101131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 435
Target Start/End: Complemental strand, 14740806 - 14740496
Alignment:
Q  135 tctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatc 234  Q
    |||||||||||  ||| || ||||||||| ||||||| ||| |   ||||  || |||||||| ||||||| ||||||| |||||||||||||||||| |    
T  14740806 tctcacaaaactggtcttcaaaagaaactcatcaaaccgacgataccattgcctagggctttgcttcaacccatacaaagatttcttcaaaagacacacc 14740707  T
Q  235 ttagacttgtcttc------accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaact 325  Q
    ||||||||||| ||      ||| || |||||| |||||   | | | |||| ||| |  |||||||||||   | ||||||| ||||||||||||||||    
T  14740706 ttagacttgtcctccacaaaaccttccggttgctccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatttgttccaact 14740607  T
Q  326 c-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagt 424  Q
    |  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||  |||| || ||||| || || || || ||||| || |||||    
T  14740606 caagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccaccggtgaaaagatctcgttgtagtcgatcccctccacttgagt 14740507  T
Q  425 acaaccctttg 435  Q
      |||||||||    
T  14740506 gaaaccctttg 14740496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 33334420 - 33334053
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcatcactcttcaatacgtagacacaattat 124  Q
    ||||||||||||||||| || | ||||||||||||| ||| |||||  |  || |||||||| | ||||||||   ||||||| | ||| ||||||  ||    
T  33334420 atctcatccttgctagagctcgccatcaagatatcatccacatataaaagaagatagagaatgactttctcattcttcttcaacatgtacacacaagaat 33334321  T
Q  125 cgtactcatctctcacaaaaccagtcatcgaaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaa 224  Q
    | ||  |   |||||||||||| ||| || ||||||||| ||||||||||| |   ||||  || |||||||| |||||||  |||||| ||||||||||    
T  33334320 catatccgcttctcacaaaaccggtcttcaaaagaaactcatcaaactgacgataccattgcctagggctttgcttcaacccgtacaaagatttcttcaa 33334221  T
Q  225 aagacacatcttagacttgtcttc------accctctggttgcaccat---gagtctttcttaaagctttccatgtaagaacatgatcttcacgtccatt 315  Q
    |||||||| |||||||||||| ||      ||| || |||||  ||||   || | | |||| ||| |  |||||||||||   | ||||||| |||||     
T  33334220 aagacacaccttagacttgtcctccacaaaaccttccggttgttccatgtagattgtctcttcaaggtcaccatgtaagaaagcggtcttcacatccatc 33334121  T
Q  316 tgttccaactc-ggattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccac 382  Q
    |||||||||||  ||||  || |||||||||| || ||||||||||||||||||||||| ||||||||    
T  33334120 tgttccaactcaagattgaattgattcacaatagccataagtatccttatggaacaatgcttcaccac 33334053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 433
Target Start/End: Complemental strand, 24434336 - 24434240
Alignment:
Q  337 gattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||  ||||||| |||||||| || | ||| ||||| || |||||  |||||||    
T  24434336 gattcacaataaccataagtatccttatggaacaatgtttcaccaccggtgagaatatctcattgtagtaaatcccctccacttgagtgaaaccctt 24434240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 13881791 - 13881698
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  13881791 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 13881698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 17691981 - 17692074
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  17691981 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 17692074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 35203192 - 35203285
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || ||||||||| |||||||||    
T  35203192 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacctgagtaaaaccctttg 35203285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 25944721 - 25944628
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctttg 435  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| || || ||||| |||||||| || || || |||||| |||||||||    
T  25944721 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaagatttcattgtaatcaatcccttccacttgagtaaaaccctttg 25944628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 14740915 - 14740870
Alignment:
Q  26 atctcatccttgctagaacttgtcatcaagatatcacccatatata 71  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  14740915 atctcatccttgctagagcttgccatcaagatatcatccacatata 14740870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 155 - 433
Target Start/End: Original strand, 33912 - 34200
Alignment:
Q  155 aaagaaacttatcaaactgacaacgtcattttcttgggctttgtttcaaccaatacaaatatttcttcaaaagacacatcttagacttgtcttc------ 248  Q
    ||||||||| ||||||| ||| |   ||||| || || ||||| ||||||| ||||||| ||||||| |||||||||| |||||||||||| ||          
T  33912 aaagaaactcatcaaaccgacgataccatttcctaggactttgcttcaacccatacaaagatttctttaaaagacacaccttagacttgtcctccccaaa 34011  T
Q  249 accctctggttgcaccatg---agtctttcttaaagctttccatgtaagaacatgatcttcacgtccatttgttccaactcg-gattatatcgattcaca 344  Q
    ||| ||||||||| |||||   | | | |||| |||  | |||||||||||     |||| || |||||||||||||||||  ||||  || ||||||||    
T  34012 accttctggttgctccatgtagattgtctcttcaagggtaccatgtaagaaagcagtctttacatccatttgttccaactcaagattgaattgattcaca 34111  T
Q  345 atcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaaccctt 433  Q
    ||  | ||||||||||||||||||||||||||||||||  ||||||| ||||||||||| || || ||||| |||| |||  |||||||    
T  34112 atatccataagtatccttatggaacaatgtttcaccaccggtgagaagatctcattatactcgatcccctccacctaagttaaaccctt 34200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 7693 - 7792
Alignment:
Q  302 tcttcacgtccatttgttccaactcg-gattatatcgattcacaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcatt 400  Q
    ||||||| |||||||||||||||||  ||||  || |||||||||| || |||||||||||||||||| |||||||||||||  ||||||| ||||||||    
T  7693 tcttcacatccatttgttccaactcaagattgaattgattcacaatagccataagtatccttatggaataatgtttcaccactggtgagaagatctcatt 7792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 342 - 434
Target Start/End: Original strand, 272 - 364
Alignment:
Q  342 acaatcgctataagtatccttatggaacaatgtttcaccacaagtgagaaaatctcattataatcaattccctcaacctgagtacaacccttt 434  Q
    |||||||| ||||||| |||||| ||||||||||| |||||  |||| ||||| ||||| |||||||| || || ||||||||| ||||||||    
T  272 acaatcgccataagtacccttatagaacaatgttttaccaccggtgaaaaaatttcattgtaatcaatcccttccacctgagtaaaacccttt 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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