View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12987_low_5 (Length: 581)

Name: NF12987_low_5
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12987_low_5
NF12987_low_5
[»] chr4 (7 HSPs)
chr4 (13-509)||(47731491-47731991)
chr4 (118-509)||(50822894-50823282)
chr4 (110-501)||(26333912-26334302)
chr4 (116-509)||(11376216-11376601)
chr4 (507-566)||(47731356-47731415)
chr4 (168-348)||(12271172-12271351)
chr4 (511-566)||(26334376-26334431)
[»] chr5 (8 HSPs)
chr5 (110-505)||(11052044-11052436)
chr5 (167-509)||(24873806-24874147)
chr5 (110-436)||(11106549-11106874)
chr5 (116-222)||(30987097-30987203)
chr5 (507-547)||(24873690-24873730)
chr5 (176-253)||(4913900-4913977)
chr5 (323-408)||(30986943-30987028)
chr5 (373-441)||(18055614-18055682)
[»] chr7 (2 HSPs)
chr7 (116-509)||(9083023-9083413)
chr7 (469-509)||(27154928-27154968)
[»] chr2 (4 HSPs)
chr2 (258-509)||(43708934-43709184)
chr2 (110-262)||(43706607-43706759)
chr2 (507-544)||(43709260-43709297)
chr2 (379-408)||(564570-564599)
[»] chr1 (1 HSPs)
chr1 (168-356)||(35532701-35532888)
[»] chr6 (1 HSPs)
chr6 (116-226)||(12734486-12734595)
[»] chr8 (2 HSPs)
chr8 (116-207)||(17654871-17654961)
chr8 (323-504)||(28697088-28697269)
[»] chr3 (2 HSPs)
chr3 (110-196)||(41430547-41430633)
chr3 (325-366)||(34295602-34295643)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 509
Target Start/End: Complemental strand, 47731991 - 47731491
Alignment:
Q  13 cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  47731991 cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaa 47731892  T
Q  113 ctgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaa 212  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47731891 ctgttttatgtcttggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaa 47731792  T
Q  213 ttagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatcca-----ga 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||     |     
T  47731791 ttagtaatacccatttctttggccaacatgagacccttatagatgacataaagctcaacgtacaagatatcaagtaaattttagatgtatccaatccagt 47731692  T
Q  308 aaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgac 407  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47731691 aaagcctgataag-aaaaaacctgcatcatttcttaaaattcctccataacctgctcttataggagatctaaggcaacttccatcaacattaaggatgac 47731593  T
Q  408 acaagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcataccttga 507  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47731592 acaagaatgattattgttgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaaccataccttga 47731493  T
Q  508 at 509  Q
    ||    
T  47731492 at 47731491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 118 - 509
Target Start/End: Original strand, 50822894 - 50823282
Alignment:
Q  118 ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt 217  Q
    |||| ||||| ||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||| || | ||| || |||||||||||||||| |||    
T  50822894 ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt 50822993  T
Q  218 aatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgat 317  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||  ||  ||||||||  ||||||||||||||||||||     
T  50822994 aatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatacaagat--caaatgaattttgaatgtatccagaaaagcctgac 50823091  T
Q  318 aagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatga 417  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||| || |||||| ||||||||||||||||||||| || |||||||||||||||    
T  50823092 aagtaaaa-acctgcataattccttaaaattcctccataaccaactcttctaggagatccaaggcaacttccatcaacatttagaatgacacaagaatga 50823190  T
Q  418 ttattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    |||||| ||||||| || ||||||||| |||||| |||||||||||||||| |||||| | ||||||| |||||||||| ||||||||||||    
T  50823191 ttattgttgttccacttaatgaattggtcttcatcagtagtactagagatggaaggatgacaagcttttagggtatcaaccataccttgaat 50823282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 110 - 501
Target Start/End: Original strand, 26333912 - 26334302
Alignment:
Q  110 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 209  Q
    ||||| |||||| ||||| |||||||||||||||||||  ||||||||| ||   ||||| |||||||||||| |||| | |||||| |||||| |||||    
T  26333912 taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca 26334011  T
Q  210 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 309  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||||||||||||||| ||||||||  |||||  ||||||    
T  26334012 aaattagtaatacccatttctttggccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaa 26334111  T
Q  310 agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac 409  Q
    || |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  26334112 agtctgacaag-aaaaaacctgcatcatttcttaaaattcctccataaccagctcttataagagatccaaggcaacttcaatcaacattacggatgacac 26334210  T
Q  410 aagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcata 501  Q
    || || |||| ||| ||||||| ||||||||||||  |||||  |||||| |||||||| |||||||  |||||||||||||||||| ||||    
T  26334211 aacaaagattgttgttgttccagttgatgaattggctttcatcggtagtattagagatggaaggatagcaagctttgagggtatcaaccata 26334302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 116 - 509
Target Start/End: Original strand, 11376216 - 11376601
Alignment:
Q  116 ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 214  Q
    |||||| |||||||||| ||||| ||||||||| |||||||||||        ||| ||||| |||||||||| | |||||| ||||||||||||||||     
T  11376216 ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc 11376307  T
Q  215 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 314  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||| || ||| ||||||||||||||| ||||||||  ||||||| ||||||||||    
T  11376308 agtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcct 11376407  T
Q  315 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 414  Q
    || ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||    
T  11376408 gacaag-aaaaaacctgcataatttcttaaaattcttccataacctgctcttataggagatccaaggcaacttccatcaacattaacgatgacacaaaaa 11376506  T
Q  415 tgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    ||||||||| || |||| |||||||||| | |||||| | |||||||  | ||| |||||||||||||||||||| |||||| ||||| ||||||    
T  11376507 tgattattgttgctccacttgatgaatttgtcttcatcaatagtacttcaaatggaaggataagaagctttgaggctatcaaccatactttgaat 11376601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 507 - 566
Target Start/End: Complemental strand, 47731415 - 47731356
Alignment:
Q  507 aattgttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttat 566  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47731415 aattgttgctgcaaaaaggaaatagtaaggccccatcaccctgttcttgatccaatttat 47731356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 12271351 - 12271172
Alignment:
Q  168 ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt 267  Q
    |||| ||||||||||||||| | ||| || || || ||||| |  || ||||||||||| ||||| | || || |||||| | ||||||| |||| |  |    
T  12271351 ttgatgatgttgatacaatgtaaagagtctgaataacaaactaggttggtaatacccatgtctttagtcatcaagagaccatgatagatggcatataact 12271252  T
Q  268 caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaatt 348  Q
    || ||||||| || ||||  ||||||   ||||| |||||||||||||| ||| || ||||||||||||||||||||||||    
T  12271251 cagcatacaaaatgtcagaagaatttggaatgtagccagaaaagcctgacaag-aagaaacctgcatcatttcttaaaatt 12271172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 566
Target Start/End: Original strand, 26334376 - 26334431
Alignment:
Q  511 gttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttat 566  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||    
T  26334376 gttgctgcaaaaaggaaagagtgagggcccatcaccctattcttgatccaatttat 26334431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 110 - 505
Target Start/End: Original strand, 11052044 - 11052436
Alignment:
Q  110 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 209  Q
    ||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| ||||||||||||    
T  11052044 taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca 11052143  T
Q  210 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 309  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || |||||  ||||| | |||||    
T  11052144 aaatcagtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaa 11052243  T
Q  310 agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac 409  Q
    ||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |||    
T  11052244 agcctgacaag-aaaaaatctgcatcatttcgtaaaattcctccataaccagctcttataggagatccaaggcaacttccatcaacattaaggatgtcac 11052342  T
Q  410 aagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcatacctt 505  Q
    |||||||||||||| ||||||| |||||||||| | |||| |  |||| | |||||||| ||||  |  |||||||||||||||||| | ||||||    
T  11052343 aagaatgattattgttgttccacttgatgaattagtcttcttcggtagcattagagatggaagg--agcaagctttgagggtatcaaccgtacctt 11052436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 167 - 509
Target Start/End: Complemental strand, 24874147 - 24873806
Alignment:
Q  167 attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagt 266  Q
    ||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||    
T  24874147 attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttatagatgacatagagt 24874048  T
Q  267 tcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctctt 366  Q
    ||  ||||||||||||||| ||||||||  ||||||||| |||| ||||| ||| ||||||||||||| |||||||||||||||||||||||  ||| ||    
T  24874047 tcggcatacaagatatcagatgaattttgaatgtatccataaaatcctgacaag-aaaaaacctgcataatttcttaaaattcctccataactagctatt 24873949  T
Q  367 ataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagaga 466  Q
     || |||||| || |||||||||||||||||||||||||||||||| |||||||||  ||||||| |||||||||||| |||||| |  | || |||||     
T  24873948 gtaggagatccaatgcaacttccatcaacattaaggatgacacaagcatgattattattgttccacttgatgaattggtcttcatcaccaatattagagg 24873849  T
Q  467 tgaaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    || |||||||| ||||||| |||||||||| ||||||||||||    
T  24873848 tggaaggataacaagcttttagggtatcaaccataccttgaat 24873806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 110 - 436
Target Start/End: Complemental strand, 11106874 - 11106549
Alignment:
Q  110 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 209  Q
    ||||| |||||| ||||| || |||||| ||||| ||| ||||||||| |||  |||||| |||||||||||||||||||||||||  ||||||||||      
T  11106874 taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaaat 11106775  T
Q  210 aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa 309  Q
    |||| || | ||||||| | |||||||| ||  || |||| ||| ||| ||||||||||| || |||| |||| ||  ||||||| |||||| ||||| |    
T  11106774 aaatcagaattacccatgtttttggccagcaaaaggccctgatatatggcataaagttcagcaaacaaaatattagaagaattttggatgtaaccagaga 11106675  T
Q  310 agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac 409  Q
    | || || |||| |||||| ||||| ||||||||||| |||||||||||| || ||| || ||||||  | |||||||   |||||||||||||||||||    
T  11106674 aacccgacaagt-aaaaacttgcataatttcttaaaactcctccataaccggcccttgtaggagatcccaagcaacttaagtcaacattaaggatgacac 11106576  T
Q  410 aagaatgattattgctgttccatttga 436  Q
    |||| || |||||| ||||||||||||    
T  11106575 aagagtggttattgttgttccatttga 11106549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
Q  116 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 215  Q
    |||||| ||||| || |||||||||||| ||| | ||||| |  ||  | |||| ||||||||||||||||||||| |||| ||||||||||| |||| |    
T  30987203 ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca 30987104  T
Q  216 gtaatac 222  Q
     ||||||    
T  30987103 ttaatac 30987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 24873730 - 24873690
Alignment:
Q  507 aattgttgctgcaaaaaggaaatagtaaggccccatcaccc 547  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  24873730 aattgttgctgcaaaaaggaaagagtaagggcccatcaccc 24873690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 4913900 - 4913977
Alignment:
Q  176 gttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata 253  Q
    |||||| ||| |||||||||  |||||||||||||||| |   |||||||||||||| ||||| | |||||| |||||    
T  4913900 gttgatgcaaagaagagaattcgagtagcaaacaaaatcatcgatacccatttctttagccaatatgagaccattata 4913977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 408
Target Start/End: Complemental strand, 30987028 - 30986943
Alignment:
Q  323 aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgaca 408  Q
    |||||||||||||||||||||||| ||||| |||||| || |   || |||| |  | ||||||| | ||||||||||||||||||    
T  30987028 aaaaacctgcatcatttcttaaaactcctctataaccagcccacgtaggagagcccaagcaactttcgtcaacattaaggatgaca 30986943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 18055682 - 18055614
Alignment:
Q  373 gatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaat 441  Q
    |||| ||| ||||| |||||||||||||| || |||||||| || |||||  ||||||| |||||||||    
T  18055682 gatccaagacaactaccatcaacattaagaatcacacaagagtggttattattgttccacttgatgaat 18055614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 116 - 509
Target Start/End: Original strand, 9083023 - 9083413
Alignment:
Q  116 ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt 214  Q
    |||||| |||||||||||||||  |||||||| |||||||||| ||   |||||||||||||||||||||||| | || ||| ||||||||||||||||     
T  9083023 ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc 9083122  T
Q  215 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 314  Q
    |  ||||||||| | ||||||||||| |||||| ||||||||  |||| || ||| ||||||||||  ||| ||||||||  ||||||||||||||||||    
T  9083123 aagaatacccatatatttggccaacaagagacctttatagatagcatagagctcatcatacaagat--cagatgaattttgaatgtatccagaaaagcct 9083220  T
Q  315 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 414  Q
     | ||| |||||||||||||  |||||||||||||||||||| || |||||||   |||||| ||| ||||||||||||||||||||| |||||||||||    
T  9083221 aacaag-aaaaaacctgcatagtttcttaaaattcctccatagccagctcttactggagatccaagacaacttccatcaacattaaggttgacacaagaa 9083319  T
Q  415 tgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    ||||||||| || |||| |||||||||| | ||||||   ||||| |||||||| ||| |||| |||||||||||||||||| ||| ||||||||    
T  9083320 tgattattgttggtccacttgatgaatt-gtcttcatagatagtattagagatggaagtataacaagctttgagggtatcaaccatgccttgaat 9083413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 27154968 - 27154928
Alignment:
Q  469 aaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  27154968 aaaggataagaagctttgagggtgtcaaccataccttgaat 27154928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 258 - 509
Target Start/End: Original strand, 43708934 - 43709184
Alignment:
Q  258 acataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataa 357  Q
    ||||| || ||||||||||||||||||  ||||||||  ||||||| |||||| ||| | ||| ||||||  ||||| ||||||||||||||||||||||    
T  43708934 acatagagctcaacatacaagatatcatttgaattttgaatgtatctagaaaatcctcacaag-aaaaaagatgcataatttcttaaaattcctccataa 43709032  T
Q  358 cctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtag 457  Q
    ||| |||||||| |||||| ||  |||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||||||| |||||| |||||    
T  43709033 cctactcttataggagatccaatacaacttccatcaacattaaggatgacacaaaaatgattattgttgttccgcttgatgaattggtcttcatcagtag 43709132  T
Q  458 tactagagatgaaaggataagaagctttgagggtatcaatcataccttgaat 509  Q
    ||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  43709133 tactaaagatggaaggataacaagcttagagggtatcaaccataccttgaat 43709184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 43706607 - 43706759
Alignment:
Q  110 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca 209  Q
    ||||| |||||| ||||||||||||||  ||||| ||| |||||||||| ||  ||||| ||||||||||| |||||| | ||| || ||||| ||||||    
T  43706607 taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca 43706706  T
Q  210 aaattagtaatacccatttctttggccaacaggagacccttatagatgacata 262  Q
    |||| |||||| || |||||||||||||||| |||||||||||| ||||||||    
T  43706707 aaatcagtaatgcctatttctttggccaacaagagacccttatatatgacata 43706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 43709260 - 43709297
Alignment:
Q  507 aattgttgctgcaaaaaggaaatagtaaggccccatca 544  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43709260 aattgttgctgcaaaaaggaaatagtaagggcccatca 43709297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 564570 - 564599
Alignment:
Q  379 aggcaacttccatcaacattaaggatgaca 408  Q
    ||||||||||||||||||||||||||||||    
T  564570 aggcaacttccatcaacattaaggatgaca 564599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 168 - 356
Target Start/End: Complemental strand, 35532888 - 35532701
Alignment:
Q  168 ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt 267  Q
    |||| ||||||||||||||| | ||||||||  || ||||| |  || ||||||||||| ||||  | || ||  ||||| | |||||||||||| |  |    
T  35532888 ttgatgatgttgatacaatgtaaagaatcggcataacaaactaggttggtaatacccatgtcttcagtcagcaaaagaccatgatagatgacatataact 35532789  T
Q  268 caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccata 356  Q
    |||||||||| || ||||  ||||||   |||||||||||||||||||| |||| | | |||||||||||||||||||||||| |||||    
T  35532788 caacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaagt-agacacctgcatcatttcttaaaattccaccata 35532701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
Q  116 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta 215  Q
    |||||| ||||| || |||||| ||||| ||| |||||||||  || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| |    
T  12734595 ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca 12734497  T
Q  216 gtaatacccat 226  Q
    | |||||||||    
T  12734496 gaaatacccat 12734486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
Q  116 ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa 207  Q
    |||||| ||||| || |||||| |||||  || |||||||||| |||| ||||| |||||||||||||||| ||||||||| ||||||||||    
T  17654871 ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa 17654961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 504
Target Start/End: Complemental strand, 28697269 - 28697088
Alignment:
Q  323 aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattatt 422  Q
    ||||||| |||||||||||||| | ||||||||| ||  |||||||| |||| | | | ||||||| | ||||||| ||||| | ||| |||||||||||    
T  28697269 aaaaacccgcatcatttcttaagaatcctccatagccaactcttatatgagagccacgacaacttctaccaacatttaggattaaacatgaatgattatt 28697170  T
Q  423 gctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctttgagggtatcaatcatacct 504  Q
    | ||||||| || |  |||| | |||| |  ||| || ||| | || |||||||| ||| |||||| ||||||| |||||||    
T  28697169 gttgttccactttacaaatttgtcttcctcggtactattagtgttgcaaggataacaagttttgagagtatcaaccatacct 28697088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
Q  110 taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc 196  Q
    ||||| |||||| ||||| ||  ||||| ||||| |||||||||||||   |  |||||| | ||||||||||||||||||||||||    
T  41430547 taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc 41430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 34295602 - 34295643
Alignment:
Q  325 aaacctgcatcatttcttaaaattcctccataacctgctctt 366  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  34295602 aaacctgcatcatttcttaaaattccaccatagccagctctt 34295643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University