View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_6 (Length: 531)
Name: NF12987_low_6
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Complemental strand, 39941767 - 39941255
Alignment:
| Q |
17 |
atttacaattgagaatttggaattgacaatgaggaatttagtttgttggtgatattgtttgtaatgatgatccaaagcttctatattatttattttcaac |
116 |
Q |
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| T |
39941767 |
atttacaattgagaatttggaattgacaatgaggaatttagtgtgttggtgatattgtttgtaatgat---ccaaagcttctatattatttattttcaac |
39941671 |
T |
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| Q |
117 |
tatagtttttcattcaaatgaagattacaagtaacttgaatatatatactcaacaat-tctaaaagccaaatcattcatcaagtgttcttagctttgttg |
215 |
Q |
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| T |
39941670 |
tatagtttttcattcaaatgaagattacaagtaacttgaatatatatactcaacaatatctaaaagccaaatcattcatcaagtgttcttagctttgttg |
39941571 |
T |
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| Q |
216 |
gttgttgatacttcattgctacaaattggacaaaccttcttaatttgaagccatttgcttatacaatctgtatgataaggatggtcacaatgaagtgcaa |
315 |
Q |
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| T |
39941570 |
gttgttgatacttcattgctacaaattggacaaaccttcttaatttgaagccacttgcttatacaatctgtatgataaggatggtcacaatgaagtgcaa |
39941471 |
T |
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| Q |
316 |
ccaaggattcaccttcttcatattcaatctgacaaatcacacaacgatctattccacttgtgctttcagcaattttggaagtataagggtgtaagcaaga |
415 |
Q |
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| T |
39941470 |
ccaaggattcaccttcttcatattcaatctgacaaatcacacaacgatctattccacttgtgctttcagcaattttggaagtataagggtgtaagcaaga |
39941371 |
T |
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| Q |
416 |
agagatttcattagctggtaatcccctcttctcttctcctatgaagtttcctaattcaatcaactcttcataggataattcatctggatcaacctcatct |
515 |
Q |
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| T |
39941370 |
agagatttcattagctggtaatcccctcttctcttctcctatgaagtttcctaattcaatcaactcttcataggataattcatctggatcaacctcatct |
39941271 |
T |
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| Q |
516 |
tcttccaactccattt |
531 |
Q |
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| T |
39941270 |
tcttccaactccattt |
39941255 |
T |
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