View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12987_low_7 (Length: 484)
Name: NF12987_low_7
Description: NF12987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12987_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 147 - 370
Target Start/End: Complemental strand, 45906603 - 45906380
Alignment:
| Q |
147 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
246 |
Q |
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| T |
45906603 |
aacactttagtctgattgtttcttcatgggttggaaggtagaccacgaagcttgttcgctgatatctctttgtccgaaggaaaaacaaaaaggtcccttc |
45906504 |
T |
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| Q |
247 |
cattactaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaaca |
346 |
Q |
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| T |
45906503 |
cattagtaaagcacgaaaaatatttaacaagttgtatagttttgtcatttgcaattgtattgtgagggatgcaaaaaccctttgcatatcaagtggaaca |
45906404 |
T |
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| Q |
347 |
cttgtcaatttaactatgtataac |
370 |
Q |
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| T |
45906403 |
cttgtcaatttaactatgtataac |
45906380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 45906697 - 45906600
Alignment:
| Q |
19 |
ataaatggcatcaaatctgttattattgaaaactataaatgttagacatgcttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
116 |
Q |
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| T |
45906697 |
ataaatggcatcaaatctgttattattgaaaactataaatgttagacatgcttaaaagtataaaaatcccaaactcttgcaatagtgtctttgaaaca |
45906600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 43061629 - 43061545
Alignment:
| Q |
27 |
catcaaatctgttattattgaaaactataaatgtt-agacatgcttaaaagtataaaaatcccaaactcttgcaatagtgtctttg |
111 |
Q |
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| T |
43061629 |
catcaaacctgttattattgaaaactataaatgttaagacatactt-aaagtataaaaatcccaagctcttgcaatagtgtatttg |
43061545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 464
Target Start/End: Original strand, 3978592 - 3978786
Alignment:
| Q |
269 |
tttaacaagttgtatagttttgtcatttgcaattgtattgtgaggaatgcaaaaaccctttgcatatcaagtggaacacttgtcaatttaactatgtata |
368 |
Q |
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| T |
3978592 |
tttaacaggttgaatagtttgctcatgtgcaattgtgttgtaaggggtggaaaaacactccgcatatcaagtgtgacccttgtcaatttaactatatatc |
3978691 |
T |
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| Q |
369 |
accacagatactactattacaaaattgatcttatgcactccaaatttgtgtaactttgtttttaacggcactccttatcggaaactatctgggagc |
464 |
Q |
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| T |
3978692 |
atgacagatccatctattacgaaattgat-ttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagc |
3978786 |
T |
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