View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12988_high_10 (Length: 392)

Name: NF12988_high_10
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12988_high_10
NF12988_high_10
[»] chr3 (8 HSPs)
chr3 (17-382)||(47193463-47193828)
chr3 (247-381)||(9792564-9792698)
chr3 (27-265)||(26698512-26698750)
chr3 (27-265)||(26733675-26733913)
chr3 (27-265)||(26736900-26737138)
chr3 (70-262)||(26750879-26751071)
chr3 (207-274)||(47212255-47212322)
chr3 (27-265)||(26713664-26713902)
[»] chr7 (7 HSPs)
chr7 (241-382)||(6609317-6609458)
chr7 (241-382)||(6624663-6624804)
chr7 (204-318)||(21130440-21130554)
chr7 (207-283)||(18658605-18658681)
chr7 (207-274)||(29213017-29213084)
chr7 (204-258)||(21098712-21098766)
chr7 (204-318)||(21123312-21123426)
[»] chr4 (2 HSPs)
chr4 (17-106)||(39132397-39132486)
chr4 (204-265)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (221-258)||(11791111-11791148)
[»] chr2 (1 HSPs)
chr2 (74-110)||(23466619-23466655)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 47193828 - 47193463
Alignment:
Q  17 caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193828 caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaa 47193729  T
Q  117 aaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193728 aaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtt 47193629  T
Q  217 tcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193628 tcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaag 47193529  T
Q  317 tgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193528 tgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 47193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  247 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 346  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  347 accatgttctatatactcatagaccaaaagcctat 381  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 26698512 - 26698750
Alignment:
Q  27 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 126  Q
    ||||| ||||||||||| ||||||||||||||  | |  ||  ||||||||||||||||||| ||||||||||||||||  || || || |||   |||     
T  26698512 ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaat 26698611  T
Q  127 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 226  Q
    ||||| | ||||  ||||||||||| || || ||||||||||| || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||    
T  26698612 tatcaaggtcattcctattcaatagcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgca 26698711  T
Q  227 atgtaaaacccattccaaacactcttcatgtaaataagc 265  Q
    ||| |||| ||| |||||||||||||| |||||||||||    
T  26698712 atgcaaaatccactccaaacactcttcgtgtaaataagc 26698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 26733675 - 26733913
Alignment:
Q  27 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 126  Q
    ||||| ||||||||||| ||||||||||||||  | |  ||  ||||||||||||||||||| ||||||||||||||||  || || || |||   |||     
T  26733675 ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaat 26733774  T
Q  127 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 226  Q
    ||||| | ||||  ||||||||||| || || ||||||||||| || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||    
T  26733775 tatcaaggtcattcctattcaatagcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgca 26733874  T
Q  227 atgtaaaacccattccaaacactcttcatgtaaataagc 265  Q
    ||| |||| ||| |||||||||||||| |||||||||||    
T  26733875 atgcaaaatccactccaaacactcttcgtgtaaataagc 26733913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 26736900 - 26737138
Alignment:
Q  27 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 126  Q
    ||||| ||||||||||| ||||||||||| ||  | |  ||  ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    |||     
T  26736900 ccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaat 26736999  T
Q  127 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 226  Q
    ||||| | ||||  || |||||||| || || ||||||||||| |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||    
T  26737000 tatcatgctcattcctgttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgca 26737099  T
Q  227 atgtaaaacccattccaaacactcttcatgtaaataagc 265  Q
    ||| |||| ||| ||||||||||||||||||||||||||    
T  26737100 atgcaaaatccactccaaacactcttcatgtaaataagc 26737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 26750879 - 26751071
Alignment:
Q  70 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 169  Q
    ||||||||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||| ||||||||||| || || | |||||||||    
T  26750879 aaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcatccctattcaatagcttggacagaccaaaatc 26750978  T
Q  170 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaata 262  Q
    ||| ||||| |||||  |||  | |||||  |  || ||||| ||||| | ||| ||||| |||| ||| |||||||| ||||| ||||||||    
T  26750979 agctaccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaata 26751071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  207 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 274  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 26713664 - 26713902
Alignment:
Q  27 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 126  Q
    ||||| ||||||||||| ||||||||||| ||  | |  ||  ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    |||     
T  26713664 ccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaat 26713763  T
Q  127 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 226  Q
    ||||| | ||||  || |||||||| || || ||||||||||| |||||||| ||| || |||    |||||  |  || ||||| || || | ||| ||    
T  26713764 tatcatgctcattccttttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgca 26713863  T
Q  227 atgtaaaacccattccaaacactcttcatgtaaataagc 265  Q
    ||| |||| ||| ||||||||||||||||||||||||||    
T  26713864 atgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 241 - 382
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  241 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 340  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  341 taaagaaccatgttctatatactcatagaccaaaagcctatg 382  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  241 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 340  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  341 taaagaaccatgttctatatactcatagaccaaaagcctatg 382  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  204 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 303  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  304 tattccaatcaagtg 318  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  207 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 283  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  207 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 274  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  204 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 258  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  204 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 303  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  304 tattccaatcaagtg 318  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 39132486 - 39132397
Alignment:
Q  17 caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct 106  Q
    ||||||||||||||||||||||||||| ||||| || || ||  | | |||  ||||||||||||| |||||||| |||||||| |||||    
T  39132486 caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatatatcctcttgttcctct 39132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  204 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 265  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  221 atcacaatgtaaaacccattccaaacactcttcatgta 258  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
Q  74 ccattcaggtgccatataacctcttgtccctcttatt 110  Q
    |||||| |||||||||||||||||||| |||||||||    
T  23466619 ccattctggtgccatataacctcttgttcctcttatt 23466655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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