View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_13 (Length: 366)
Name: NF12988_high_13
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_13 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 135 - 348
Target Start/End: Complemental strand, 31055912 - 31055695
Alignment:
| Q |
135 |
tgcttgatcacatttagtgaagtataaatgatcatgggttcaacaatattttgtcgtccaactactgaatcatgatatgttggatgacaatcaataagct |
234 |
Q |
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| T |
31055912 |
tgcttgatcacatttagtggagtataaatgatcatgggttcaacaatattttgtcgtccaactactgaatcatgatatgttggatgacaatcaataagct |
31055813 |
T |
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| Q |
235 |
tttgaaaaatcatgagtgatgtgagaaatgatcg----tatacagtaggttaagttgtcctcaactttgatggatcattagtgtcggtcaattatactcg |
330 |
Q |
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| T |
31055812 |
tttgaaaaatcatgagtgatgcgagaaatgatcgtatatatacagtaagttaagttgtcctcaactctgatggatcattagtgtcggtcaattatactcg |
31055713 |
T |
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| Q |
331 |
ataacaatcaaaccttat |
348 |
Q |
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||||||| |||||||||| |
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| T |
31055712 |
ataacaaccaaaccttat |
31055695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 31056891 - 31056786
Alignment:
| Q |
8 |
ggacatcatcaatatgagattgggtg--ccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacata |
105 |
Q |
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||||| || ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31056891 |
ggacagcagcaatatgagattgggtgtgccaaactatgagttaatatttgatatacaatcttattttatatgtaaaccttcctgcctgttttaacacata |
31056792 |
T |
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| Q |
106 |
ctcgat |
111 |
Q |
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|||||| |
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| T |
31056791 |
ctcgat |
31056786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 31080752 - 31080662
Alignment:
| Q |
18 |
aatatgagattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactc |
108 |
Q |
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| T |
31080752 |
aatatgagattgagtctccaactatgagttgataagttatatacactcttattttataggtaaaccttcgtgcatgttttaacacatactc |
31080662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 31046049 - 31045963
Alignment:
| Q |
25 |
gattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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| T |
31046049 |
gattgggtccccaactatgagataatgggtgatatacactcttattttatagggaaatcttcatgcctgttttaacacatactcgat |
31045963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 31027179 - 31027122
Alignment:
| Q |
54 |
tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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| T |
31027179 |
tgatatacactcttattttataggtaaacctctgtgcctgttttaacacatactcgat |
31027122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 31096265 - 31096352
Alignment:
| Q |
24 |
agattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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| T |
31096265 |
agattgggtccccaactatgtgttaataagtgatgtacactcttattttataagtaaaacttagtgcctattttaacgtatactcgat |
31096352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 31035590 - 31035533
Alignment:
| Q |
54 |
tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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| T |
31035590 |
tgatatacactcttcttttataggaaaaccttcatgactgttttaacacatactcgat |
31035533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 31059242 - 31059173
Alignment:
| Q |
34 |
ccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacaca |
103 |
Q |
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||||||||||||| | ||| ||||||||| |||||||||||| ||||| ||| ||| |||||| ||||| |
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| T |
31059242 |
ccaaactatgagtaagtaaatgatatacactcttattttataggtaaatctttgtgcctgtttttacaca |
31059173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 31110604 - 31110547
Alignment:
| Q |
54 |
tgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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| T |
31110604 |
tgatatacacccttattttataggtaaacattcatacatgttttaacacatactcgat |
31110547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 31070109 - 31070017
Alignment:
| Q |
20 |
tatgagattgg-gtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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||||||||||| || || |||||||| ||||| ||||||||| |||||||||||| ||||| ||| ||| |||||| |||||| |||||| |
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| T |
31070109 |
tatgagattggagtccccaactatgacttaattggtgatatacactcttattttataggtaaatctttctgactgttttgacacatcctcgat |
31070017 |
T |
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Target: scaffold0018 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 170676 - 170767
Alignment:
| Q |
20 |
tatgagattgggtgccaaactatgagttaataattgatatacattcttattttatatgtaaaccttcctgcttgttttaacacatactcgat |
111 |
Q |
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||||||||||||| || ||||||| |||||||| ||||| ||| |||||||||||| |||||||||| | |||||||||| ||||||||| |
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| T |
170676 |
tatgagattgggtccccaactatgggttaataagtgatacacactcttattttataggtaaaccttcttctatgttttaacatatactcgat |
170767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 4968 - 5015
Alignment:
| Q |
37 |
aactatgagttaataattgatatacattcttattttatatgtaaacct |
84 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
4968 |
aactatgagttaataagtgatatacactcttattttatagataaacct |
5015 |
T |
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