View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_15 (Length: 336)
Name: NF12988_high_15
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 6971599 - 6971269
Alignment:
| Q |
1 |
caatatatgaatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggc |
100 |
Q |
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| T |
6971599 |
caatatatgaatctctttcctgcaaaatcccattaataataatataatttgaaatcattatttaatacatgcacacaatctctctccctctctatggggc |
6971500 |
T |
|
| Q |
101 |
catatttataagcactaatataaaaaacatcattctaatataaagtttaggtgagttggattttcagggctcgtcaaaattagagctgacctcaagattt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
6971499 |
catatttataagcactaatataaaaaatatcattctaatataaagtttaggtgagttggattttcaggactcatcaaaatcagagctgacctcaagattt |
6971400 |
T |
|
| Q |
201 |
aaagactgtttatagagatttttactgatcacccaccaaatattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactc |
300 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971399 |
aaagactgtttatagaggtttttactaatcacccaccaaatattaatatataattgtatctatagggcgttagtaaataaatttatcctccacacaactc |
6971300 |
T |
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| Q |
301 |
tctctacaagtctcccttgattcttctctct |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6971299 |
tctctacaagtctcccttgattcttctctct |
6971269 |
T |
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