View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12988_high_16 (Length: 335)

Name: NF12988_high_16
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12988_high_16
NF12988_high_16
[»] chr8 (4 HSPs)
chr8 (112-234)||(26798885-26799007)
chr8 (104-228)||(27518518-27518641)
chr8 (230-317)||(26799061-26799148)
chr8 (95-166)||(15065268-15065341)
[»] chr5 (2 HSPs)
chr5 (74-234)||(23010721-23010880)
chr5 (175-207)||(11983623-11983655)
[»] chr7 (1 HSPs)
chr7 (89-201)||(15028788-15028898)
[»] chr3 (1 HSPs)
chr3 (124-227)||(38363574-38363677)
[»] chr4 (1 HSPs)
chr4 (90-122)||(6087851-6087883)
[»] chr2 (1 HSPs)
chr2 (245-285)||(28581450-28581490)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 26798885 - 26799007
Alignment:
Q  112 tattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaagagaaaattt 211  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798885 tattaattgttgttatctttttattgttttggtgaatatgccctcataaaaagttagtgatagattaaatgcatccactaatattaaaaagagaaaattt 26798984  T
Q  212 aaagtgagggtaaaaaggtccta 234  Q
    |||||||||||||||||||||||    
T  26798985 aaagtgagggtaaaaaggtccta 26799007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 27518641 - 27518518
Alignment:
Q  104 aatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaaga 203  Q
    ||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  27518641 aatgaggttattaattgctgttatttttttattgttttagtaaatatgccctcataaaaagtt-gtgatatattaaatgcatccactaatattaaaaaga 27518543  T
Q  204 gaaaatttaaagtgagggtaaaaag 228  Q
     |||| ||||| ||| |||||||||    
T  27518542 caaaaattaaaatgaaggtaaaaag 27518518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 26799061 - 26799148
Alignment:
Q  230 tcctaggggtaaattggaaatgacctattatacagggaaaaaatactattaacccttttgataatataattgacattctctttgctct 317  Q
    |||||||||||||   ||||||||||||||||  ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  26799061 tcctaggggtaaaccagaaatgacctattatatcggggaaaaaaactattaactcttttgataatataattgacattctctttgctct 26799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 15065268 - 15065341
Alignment:
Q  95 atcaaaaccaatgaagttattaattgttgttatctttt--tattgttttggtaaatatgccctcacaaaaagtt 166  Q
    |||||||||||||||||||||| ||||| || | ||||  ||||||||||| ||||||||||| | ||||||||    
T  15065268 atcaaaaccaatgaagttattagttgttattttttttttttattgttttggcaaatatgccctgataaaaagtt 15065341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 23010880 - 23010721
Alignment:
Q  74 taagagaagaaaacaaaaaacatcaaaaccaatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgata 173  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| || | | ||    
T  23010880 taagagaagaaaacaaaaaacataaaaaccaatgaggttattaatagttgttatctttttattgttttggcaaatatgtcctcataaaaa-tttgcgtta 23010782  T
Q  174 gattaaatgcatccactaatattaaaaagagaaaatttaaagtgagggtaaaaaggtccta 234  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  23010781 gattaaatgcatccactaatattaaaaagacaaaatttaaagtgagggtaaaaaagtccta 23010721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 11983623 - 11983655
Alignment:
Q  175 attaaatgcatccactaatattaaaaagagaaa 207  Q
    ||||||| |||||||||||||||||||||||||    
T  11983623 attaaatacatccactaatattaaaaagagaaa 11983655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 15028898 - 15028788
Alignment:
Q  89 aaaaacatcaaaaccaatgaagttattaattgttgttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatcca 188  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||| |||    |||||| ||||||  |||| || |||||| |||||||| |||||    
T  15028898 aaaaacatcaaaacaaatgatgttatta-ttgttgttatctttttattatttgaccaaatataccctcatgaaaaatt-gtgatacattaaatgtatcca 15028801  T
Q  189 ctaatattaaaaa 201  Q
    |||||||||||||    
T  15028800 ctaatattaaaaa 15028788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 38363677 - 38363574
Alignment:
Q  124 ttatctttttattgttttggtaaatatgccctcacaaaaagttagtgatagattaaatgcatccactaatattaaaaa-gagaaaatttaaagtgagggt 222  Q
    |||||||  ||||||||||  ||||||| | ||| |||||||| |||| ||||| ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  38363677 ttatcttcatattgttttgacaaatatgtcttcataaaaagtt-gtgacagatttaatgcttccactaatattaaaaaagagaaaatttaaggtgagggt 38363579  T
Q  223 aaaaa 227  Q
    |||||    
T  38363578 aaaaa 38363574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 6087851 - 6087883
Alignment:
Q  90 aaaacatcaaaaccaatgaagttattaattgtt 122  Q
    |||||||||||||||||||||||||| ||||||    
T  6087851 aaaacatcaaaaccaatgaagttatttattgtt 6087883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 28581490 - 28581450
Alignment:
Q  245 ggaaatgacctattatacagggaaaaaatactattaaccct 285  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  28581490 ggaaatgacctattttacagggaaaaagcactattaaccct 28581450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University