View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_19 (Length: 303)
Name: NF12988_high_19
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 2752062 - 2751797
Alignment:
| Q |
19 |
cttccaaaaataattaggtaacgagggattgatgaagcaggttggctaagtcacatacatgtcctcttgattaactttgaatcaacttaaatataatgaa |
118 |
Q |
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| T |
2752062 |
cttccaaaaataattaggtaacgagggat-gatgaagccagttggctaagtcacatacatgtcctcttgattaactttgaatcaacttaaata--atgaa |
2751966 |
T |
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| Q |
119 |
agcagaattaatcttggttagcagaataaaaatattcattcaaatgaggatattttgattattacatggacagaaacttcaaaatgacgtctgaatggag |
218 |
Q |
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| T |
2751965 |
agcagaattaatcttggttagcaaaataaaaatattcattcaaatgaggatattttgattattacatggacagaaacttcaaaatgacgtctgaatggag |
2751866 |
T |
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| Q |
219 |
tccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccaaattataataacatacta |
287 |
Q |
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| T |
2751865 |
tccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccatattataataacatacta |
2751797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 2800491 - 2800434
Alignment:
| Q |
200 |
aaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaag |
257 |
Q |
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| T |
2800491 |
aaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaag |
2800434 |
T |
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