View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_2 (Length: 602)
Name: NF12988_high_2
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 3677871 - 3678463
Alignment:
| Q |
1 |
acacacctaatccgagaagtgtctctgcttcatcacattcatctatgtgactaaaaaatgtatgaatagatagggttgaaaaggagggggtaaattaatc |
100 |
Q |
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|||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
3677871 |
acacgcctaatccgaaaagtgtcactgcttcatcactttcatctatgtgactaaaaaatgcatgaatagatagggttgaaaacaagggggtaaattaatc |
3677970 |
T |
|
| Q |
101 |
aagttttcctttaaaacattttgcaaaatagcctaggaaacacacacacagatatgaagtggtgagtgagttcacataagattattgatattcacaagat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3677971 |
aagttttcctttaaatcattttgcaaaatagcctaggaaacacacacacaaaaatgaagtggtgagtgagttcacataagactattgatattcacaagat |
3678070 |
T |
|
| Q |
201 |
aaaagtgaaaa---taacatattttattgattgtgtacaaggtggtgccatctgcaattttagcaatatttatccacccatttacaagacatgtttggat |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678071 |
aaaagtgaaaaatataacatattttattgattgtgtacaaggtggtgccatctgcaattttagcaatatttatccacccatttacaagacatgtttggat |
3678170 |
T |
|
| Q |
298 |
agccagggttctatgggcgttcaccgtatacgtggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggtttgcagcctctcaatt |
397 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678171 |
agccagggttctatgggcgttcaccgtatatgtggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggtttgcagcctctcaatt |
3678270 |
T |
|
| Q |
398 |
taatttgttttactataatcttatgccttatagagtatattgtaaatttaacttc----nnnnnnncagatggttgaaacatttacaggatattatgtat |
493 |
Q |
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| T |
3678271 |
taatttgttttactataatcttatgccttatagagtatattgtaaatttaacttctttttttttttcagatggttgaaacatttacaggatattatgtat |
3678370 |
T |
|
| Q |
494 |
ttgctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattcgtaattttttcaatttggttcctagcttatattt |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678371 |
ttgctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattcgtaattttttcaatttggttcctagcttatattt |
3678463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 460 - 552
Target Start/End: Original strand, 3662999 - 3663091
Alignment:
| Q |
460 |
cagatggttgaaacatttacaggatattatgtatttgctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattc |
552 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||| |
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| T |
3662999 |
cagatcgttgaaacattcacaggatattatgtatttgctcttggtgtctcaagatttctctcattggctttttggattattcatgtaagattc |
3663091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 460 - 552
Target Start/End: Original strand, 3685874 - 3685966
Alignment:
| Q |
460 |
cagatggttgaaacatttacaggatattatgtatttgctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgagattc |
552 |
Q |
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|
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
3685874 |
cagatggttgaaacattcacaggttattatgtatttgctcttggtgtttcaagatttttttcactggcttattggattattcatgtgagattc |
3685966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 548
Target Start/End: Original strand, 3669322 - 3669410
Alignment:
| Q |
460 |
cagatggttgaaacatttacaggatattatgtatttgctcttggtgtctcaagatttgtatcattggcttattggattattcatgtgag |
548 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | || | || | |||||||||||||||||| |
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| T |
3669322 |
cagatggttgaaacattcacaggatattatgtatttgctcttggtgtttcaagattcttcacacttgcattttggattattcatgtgag |
3669410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 3662865 - 3662916
Alignment:
| Q |
330 |
tggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggt |
381 |
Q |
| |
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||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
3662865 |
tggaaactatttcaattcttccccaacttcgttatatgcaaaatgcaaaggt |
3662916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 3685729 - 3685782
Alignment:
| Q |
330 |
tggaagctatttcaatacttcctcaacttcgttatatgcaaaatgcaaaggttt |
383 |
Q |
| |
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||||| || ||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
3685729 |
tggaaactgtttcagtacttcctcaaattcgttatatgcaaaatgcaaaggttt |
3685782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 3685606 - 3685657
Alignment:
| Q |
208 |
aaaataacat-attttattgattgtgtacaaggtggtgccatctgcaatttt |
258 |
Q |
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|
|||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
3685606 |
aaaataacattattttattgattgtgtactaggtggtgccttctgcaatttt |
3685657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 3669060 - 3669117
Alignment:
| Q |
208 |
aaaataacatattttattgattgtgtacaaggtggtgccatctgcaattttagcaata |
265 |
Q |
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||||||||||||| |||||||||||||||||||| | | ||||||||||| |||||| |
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| T |
3669060 |
aaaataacatattctattgattgtgtacaaggtgatagcttctgcaattttggcaata |
3669117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 3662739 - 3662772
Alignment:
| Q |
207 |
gaaaataacatattttattgattgtgtacaaggt |
240 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
3662739 |
gaaaataacagattttattgattgtgtacaaggt |
3662772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6247695 - 6247727
Alignment:
| Q |
1 |
acacacctaatccgagaagtgtctctgcttcat |
33 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
6247695 |
acacacctaatccgagaagtgtctgtgcttcat |
6247727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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