View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_29 (Length: 241)
Name: NF12988_high_29
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_29 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 61080 - 61287
Alignment:
| Q |
19 |
ttggctgccctgcaacatgggacctggagcaccaaactcagtttaaaagccttttgagctgtggtagaaaggttggcgaaaa-ctacacatgatttggtt |
117 |
Q |
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| T |
61080 |
ttggctgccctgcagcatgggacctggagcaccaaactcagtttaaaagccttttgagctgtggtagaaaggttggcgaaaaactacacatgatttggtt |
61179 |
T |
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| Q |
118 |
ctcaaatgtttaggtagttcggaaagctagaaataatatgaccttctcccagaaaggttttgatcgggagaaggttgtagaagatgccaaaattttatct |
217 |
Q |
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| T |
61180 |
ctcaaatgtttaggtagtttggaaagctagaaataatatgaccttctcccaaaaaggtttcgatcgggagaaggttgtagaagatgccaaaattttatct |
61279 |
T |
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| Q |
218 |
ttaaattt |
225 |
Q |
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|||||||| |
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| T |
61280 |
ttaaattt |
61287 |
T |
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