View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_30 (Length: 240)
Name: NF12988_high_30
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 6585804 - 6586025
Alignment:
| Q |
19 |
catactgcaattatggaaacacacatcaatagctattcttgatttaacttttgttgtgttaggaggaacaaaatagaaaatatttatcacttttattagg |
118 |
Q |
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| T |
6585804 |
catactgcaattatggaaacacaaatcaataactattctcgatttaacttttgttgtgttaggaggaacaaaatagaaaatatttatcacttttattagg |
6585903 |
T |
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| Q |
119 |
aaaacctcaattgccctaaaaataatttaggataagagtggcatcttgaaaatcggttatataaatgtgttagacccaatataaaaactaatattataat |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6585904 |
aaaacctcaattgccctaaaaataatttagaataagagtggcatcttgaaaatcggttttataaatgtgttagacccaatataaaaactaatattataat |
6586003 |
T |
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| Q |
219 |
attggtatcataagagtttatc |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
6586004 |
attggtatcataagagtttatc |
6586025 |
T |
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