View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_high_8 (Length: 449)
Name: NF12988_high_8
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 4 - 432
Target Start/End: Original strand, 6971577 - 6972005
Alignment:
| Q |
4 |
gcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtat |
103 |
Q |
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| T |
6971577 |
gcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtat |
6971676 |
T |
|
| Q |
104 |
ctgggaaatcattgcagcaacaacaaggttccaagcattttattggaaaagacttgttaatggcaaatggtgaagattggaatcaccaacgtcaccttgt |
203 |
Q |
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| T |
6971677 |
ctgggaaatcattgcaacaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatggtgaagattggaatcaccaacgtcacattgt |
6971776 |
T |
|
| Q |
204 |
ttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaatgtattcggtgcaattaggatatccctgcactcacacagtcatgtatt |
303 |
Q |
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| T |
6971777 |
ttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaacgtattcggtgcaattggggtatccctacactcacacagtcatgtatt |
6971876 |
T |
|
| Q |
304 |
gccgattgttagatttacatcaaacatttcaaaaatacgtagattttattttattttcgaaaatttaatataccaagtttaaaattataattgttcaata |
403 |
Q |
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| T |
6971877 |
gccgattgttagatttacatcaaacatttcaaaaatacgtagattttattttattttcgaaaatttgatataccaagtttaaaattaaaattgttacata |
6971976 |
T |
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| Q |
404 |
ttgatccaacattcattgatacagggtga |
432 |
Q |
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| T |
6971977 |
ttgatctaacattcattgatacagggtga |
6972005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 1266471 - 1266686
Alignment:
| Q |
6 |
aggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtatct |
105 |
Q |
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| T |
1266471 |
aggaaagaggtatatatattggaatggtccagagccaaggttgtgtttgacagaaactgaattgataaaagagtttctttcaaaatacagtacagtatct |
1266570 |
T |
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| Q |
106 |
gggaaatcattgcagcaacaacaaggttccaagcattttattggaaaagacttgttaatggcaaatggtgaagattggaatcaccaacgtcaccttgttt |
205 |
Q |
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| T |
1266571 |
gggaaatcatggttacaaaaacagggttcaaaacatttcattggagaaggagtattgatggcaaatggtgaaaattggtatcaccaacgtcacattgttg |
1266670 |
T |
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| Q |
206 |
cccctgcattcatggg |
221 |
Q |
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| T |
1266671 |
cccctgcattcatggg |
1266686 |
T |
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