View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_1 (Length: 660)
Name: NF12988_low_1
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 7420748 - 7421382
Alignment:
| Q |
1 |
gaacaagcttaacaaagatgcccaaataaaacatcaagaaatacaacaagactaaaatacaccaacaaagccaatgaaagttggttaagttggtaataat |
100 |
Q |
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| T |
7420748 |
gaacaagcttaacaaagctgcccaaataaaacaccaagaaatacaacaagactaaaatacaccaacaaagccaatgaaagttggttaagttggtaataat |
7420847 |
T |
|
| Q |
101 |
taagttgactcattcataagtaactttaaagctcgtcgagctttaaggtctgacttgactctaataagttgaggagctcaactcacataaagtcaacttt |
200 |
Q |
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| T |
7420848 |
taagttgactcattcataagtaactctaaagcttgtcgagctttaaggtttgacttgactctaataagttgaggagcccaactcacataaagtcaacttt |
7420947 |
T |
|
| Q |
201 |
ttattaaaacaaatacaccaacaaaagaacaagaacgctttcataggaaagatataaaacaacaaaactnnnnnnnncacaca-atgattctccaaacat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
7420948 |
ttattaaaacaaatacaccaacaaaagaacaagaacgctttcataggaaagatataaaacaacaaaact-aaaaagacacaaagatgattctccaaacat |
7421046 |
T |
|
| Q |
300 |
ggcaaatccacaatgactaaatgcacatccttccattctaacagcaacagtaacaccaacaatacttgcaaagtataatcaatatgcttctttgccacct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7421047 |
ggcaaatccacaatgactaaatgcacatccttccattc------------taacaccaacaatacttgcaaagtataatcaatatgcttctttgccacct |
7421134 |
T |
|
| Q |
400 |
gtcaaagaaatttaaaggttaaagagagaaaaattgaattgtgcgtggaatcataagtgtaagaatattttgaaataaaattataagtttagaagtaact |
499 |
Q |
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| T |
7421135 |
gtcaaagaaatttaaaggttaaagagagaaaaattgaattgtgcgtggaatcataagtgtaagaatattttgaaataaaattataagtttagaagtaact |
7421234 |
T |
|
| Q |
500 |
aaattggttg--nnnnnnnncttaactgctaagacagaagcaaatatgtgaaacacacttcggaagctgaggtccggtacaaataaatgggcagtcttca |
597 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7421235 |
aaattggttgaaaaaaaaaacttaactgctaagacagaagcaaatatgtgaaacacacttcggaatctgaggtccggtacaaataaatgggcagtcttca |
7421334 |
T |
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| Q |
598 |
tctctattacatcgagttccatttacgacataaagtaggaaaagaaat |
645 |
Q |
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| T |
7421335 |
tctctattacatcgagttccatttacgacataaagtaggaaaagaaat |
7421382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 887433 - 887512
Alignment:
| Q |
1 |
gaacaagcttaacaaagatgcccaaataaaa--catcaagaaatacaacaagactaaaatacaccaacaaagccaatgaa |
78 |
Q |
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| T |
887433 |
gaacaagcttaacaaagctgcccaaataaaaaacaccaagaaatacaacaagactaaaatacaccaacagagccaatgaa |
887512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 887546 - 887654
Alignment:
| Q |
145 |
aaggtctgacttgactctaataagttgaggagctcaactcacataaagtcaactttttattaaaacaaatacaccaacaaaagaacaagaacgctttcat |
244 |
Q |
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|||||||||||| |||||||| ||| |||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||| |||| |||||||| |
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| T |
887546 |
aaggtctgacttaactctaatgagtcgaggagctcaactcgcataaa-----cgttttattaaaa-aaataaaccaacaaaagaaccagaaagctttcat |
887639 |
T |
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| Q |
245 |
aggaaagatataaaa |
259 |
Q |
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|||||||||| |||| |
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| T |
887640 |
aggaaagataaaaaa |
887654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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