View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12988_low_11 (Length: 378)
Name: NF12988_low_11
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 45882047 - 45881702
Alignment:
| Q |
18 |
agtgaaaacgtagatagactcaagtgacttacatgactatattatccttcacatactgtcattttttaaggtcaaagatgctgttgttggaacttgcatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45882047 |
agtgaaaacgtagatagactcaagtgacttacatgactatattatccttcacatactttcattttttaaggtcaaagatgccgttgttggaacttgcatt |
45881948 |
T |
|
| Q |
118 |
ttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45881947 |
ttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcga |
45881848 |
T |
|
| Q |
218 |
aggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaatta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45881847 |
aggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaatta |
45881748 |
T |
|
| Q |
318 |
tgctatttcacaatgtcctgcacttaggactccattattatctgtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45881747 |
tgctatttcacaatgtcctgcacttaggactccattatcatctgtg |
45881702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 45857015 - 45856708
Alignment:
| Q |
18 |
agtgaaaacgtagatagactcaagtgacttacatgactatattatccttcacatactgtcattttttaaggtcaaagatgctgttgttggaacttgcatt |
117 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| | || | ||||| || |||| ||||||||||| |
|
|
| T |
45857015 |
agtgaaaacgaagatagactca-gtgacttacatgactatattatcctccacatactgtcttttctgaacgctaaagacgcggttg---gaacttgcatt |
45856920 |
T |
|
| Q |
118 |
ttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaatttgtgtcga |
217 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||||| | ||| |||||||||| ||| ||||||||||||||||| |||||||| | |
|
|
| T |
45856919 |
ttgtccccaagatacaaggatctctggaaacaacttccaaatcttacattgtgttcctatgactttcgaactttcaagatattcaccaactttgtgtcta |
45856820 |
T |
|
| Q |
218 |
aggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggttgtgaatta |
317 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||| | || |||| ||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45856819 |
aggttttatctcttcgtgattcctctatcgcactccacgctctagaatattccaagagtggttgcattgagcctcgccaactcaaaaaggttgtgaatta |
45856720 |
T |
|
| Q |
318 |
tgctatttcaca |
329 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45856719 |
tgctatttcaca |
45856708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 2996459 - 2996392
Alignment:
| Q |
178 |
gactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctat |
245 |
Q |
| |
|
||||||| ||| | ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
2996459 |
gactttcgaacttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctat |
2996392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 20948801 - 20948880
Alignment:
| Q |
186 |
aacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactctagatt |
265 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||| |||||||||| ||||| |||||||| || | |||||||| |||| |
|
|
| T |
20948801 |
aacatacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgatt |
20948880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 20949498 - 20949555
Alignment:
| Q |
192 |
caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcaca |
249 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
20949498 |
caagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcaca |
20949555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 20981867 - 20981806
Alignment:
| Q |
190 |
ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
251 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |||| |
|
|
| T |
20981867 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20981806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 20995026 - 20994965
Alignment:
| Q |
190 |
ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
251 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |||| |
|
|
| T |
20995026 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20994965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 45870467 - 45870386
Alignment:
| Q |
170 |
attcttatgactttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
251 |
Q |
| |
|
||||| ||||||||| ||| | ||||||||||||| |||||| || | ||||||||||||| | |||||||||||| |||| |
|
|
| T |
45870467 |
attctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctctatctcact |
45870386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 45850920 - 45850873
Alignment:
| Q |
18 |
agtgaaaacgtagatagactcaagtgacttacatgactatattatcctt |
66 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45850920 |
agtgagaacgaagatagactca-gtgacttacatgactatattatcctt |
45850873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 20977482 - 20977539
Alignment:
| Q |
192 |
caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcaca |
249 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||| | |||||||| |||||| |
|
|
| T |
20977482 |
caagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctccatcaca |
20977539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 44501417 - 44501338
Alignment:
| Q |
181 |
tttcaaacattcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct |
260 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
44501417 |
tttcacactttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct |
44501338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University