View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_12 (Length: 377)
Name: NF12988_low_12
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 2752312 - 2752571
Alignment:
| Q |
4 |
cagaaacactaattggttgagcaaccatggaagaatctaagccacttcctatttccttat-------------ctgctacactagactcaatcactcaac |
90 |
Q |
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| T |
2752312 |
cagaaacactaattggttgagctaccttggcagaatctaagccacttcctatttcctaacttcttcccttctgctgctacactagactcaatcactcaac |
2752411 |
T |
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| Q |
91 |
atgtgcaagagcttaccatcactcacacagaccaaatacaaaacaatatatagctacaaccactccaacagttactctaaacttggtgtttcacgaatga |
190 |
Q |
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| T |
2752412 |
atgtgcaagagcttaccatcactcacacagaccaaatacaaaacaata----gctacaaccactccaacagttactctaaacttggtgtttcacgaatga |
2752507 |
T |
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| Q |
191 |
agttagttttattaataatttcatgtgtctctttaagttgacaattgtggacagaaatttgggt |
254 |
Q |
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| T |
2752508 |
agttagttttattaataatttcatgtgtctctttaagttgacaattgtggacagaaatttgggt |
2752571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 2752622 - 2752690
Alignment:
| Q |
256 |
tcaaaataaaatgcttccttctcgtccggcaaataattaagaaaaatgttgattccaatcacttagtga |
324 |
Q |
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| T |
2752622 |
tcaaaataaaatgcttccttctcgtccggcaaataactaagaaaaatgttgattccaatcacttagtga |
2752690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 2762002 - 2762042
Alignment:
| Q |
140 |
atagctacaaccactccaacagttactctaaacttggtgtt |
180 |
Q |
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| T |
2762002 |
atagctacaaccactccaacaaggactctaaacttggtgtt |
2762042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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