View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_14 (Length: 340)
Name: NF12988_low_14
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 30496622 - 30496503
Alignment:
| Q |
17 |
actctgtacaccttagacaaatgcatgttagtttgtgtttacagttgcttaatccattgcaa-aaaatatttattttaaatgaactgactttgtaaaatt |
115 |
Q |
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| T |
30496622 |
actctgtacaccttagacaaatgcatgttagtttgtgtttacagttgcttaatccattgcaaaaaaatatttattttaaatgaactgactttgtaaaatt |
30496523 |
T |
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| Q |
116 |
agtaaacaaatgtaaattca |
135 |
Q |
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| T |
30496522 |
agtaaacaaatgtaaattca |
30496503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 30496434 - 30496309
Alignment:
| Q |
206 |
agtccataaaattactaataaaaaaggtgctaggatgtatttgcaatttcgatacatttaaagattttagtgataacatctcat--atattcagagacta |
303 |
Q |
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| T |
30496434 |
agtccataaaattactaataaaaaaggtgctaggatgtatttgcaatttcgatacatttaaagattttagtgataaaatctcatatatattcagagacta |
30496335 |
T |
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| Q |
304 |
aaaagattgtttattcataattagta |
329 |
Q |
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| T |
30496334 |
aaatgattgtttattcataattagta |
30496309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 17759217 - 17759286
Alignment:
| Q |
245 |
tttgcaatttcgatacatttaaagattttagtgataacatctcatatattcagagactaaaaagattgtt |
314 |
Q |
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| T |
17759217 |
tttgcaatttcgatacatttaaggattatagtggcaacgtctcacacattcagagactgaaatgattgtt |
17759286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 22010138 - 22010079
Alignment:
| Q |
207 |
gtccataaaattactaataaaaaaggtgcta-ggatgtatttgcaatttcgatacattta |
265 |
Q |
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| T |
22010138 |
gtccataaaattactaacaaaagaggttctagggatgtgtttgcaatttagatacattta |
22010079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 535863 - 535947
Alignment:
| Q |
206 |
agtccataaaattactaataaaaaaggtgcta-ggatgtatttgcaatttcgatacatttaaagattttagtgataacatctcata |
290 |
Q |
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|||||||||||||||||| |||| |||| ||| |||| | |||||||||| |||||||||| ||| | |||||| |||| |||||| |
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| T |
535863 |
agtccataaaattactaacaaaagaggttctagggatat-tttgcaattttgatacatttagagactatagtgacaacacctcata |
535947 |
T |
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