View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_17 (Length: 326)
Name: NF12988_low_17
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 36588950 - 36588651
Alignment:
| Q |
16 |
attatggaattgcattttgtcaaaagaggggttcaaaccctgtaaatggcgcattcaaattctaaaatgcaaatgtataaaaatatttatacnnnnnnnt |
115 |
Q |
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| T |
36588950 |
attatggaattgcattttgtcacaagaggggttcaaaccctgtaaatggcgcattcaaattctaaaatgcaaatgcataaaagtatttataaaaaaa--- |
36588854 |
T |
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| Q |
116 |
aaacagttagctttggttgaatcgtgactaattctctcctttttaaatgaaagttaaatatgcttcagattataaaatttaaaaatcaagacacattttt |
215 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36588853 |
aaacagttagctttggttgaatcgagactaattttctcctttctaaatgaaagttaaatatgcttcagattataaaatttaaaaatcaagacacattttt |
36588754 |
T |
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| Q |
216 |
gagaaagcgaggaacgcgcaaggggcgtgtgaggggtggg---------ccctttcaaaaagcctaaagagtaccagcttcatgttgggccgagcccaat |
306 |
Q |
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||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||| |
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| T |
36588753 |
gagaaagcgagaaacgcgcaaggggtgtgtgaggggtgggtgggggagcccctttcaaaatggccaaagagtaccagcttcatgttgggccgagcccaat |
36588654 |
T |
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