View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12988_low_18 (Length: 325)

Name: NF12988_low_18
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12988_low_18
NF12988_low_18
[»] chr1 (1 HSPs)
chr1 (18-325)||(40473296-40473603)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 40473603 - 40473296
Alignment:
Q  18 actcgtccaaccggtgcatttcaaataggcctagacattattcgtcaacaaggtcctctttgcctttataagggcttgtctccagcaattttaagacacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473603 actcgtccaaccggtgcatttcaaataggcctagacattattcgtcaacaaggtcctctttgcctttataagggcttgtctccagcaattttaagacacc 40473504  T
Q  118 tattctacacgcctattcgaattgttgggtatgagcacctgaggagtgttatttcttctgataatgggtcgccctctatcattggcaaggctgttgttgg 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473503 tattctacacccctattcgaattgttgggtatgagcacctgaggagtgttatttcttctgataatgggtcgccctctatcattggcaaggctgttgttgg 40473404  T
Q  218 tggaatctctggcagtatggctcaggtgagaatatttgtgcagaattcttgacaatttctcatagtaagtaaataattaagatttgtaattcaaattttc 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40473403 tggaatctctggcagtatggctcaggtgagaatatttgttcagaattcttgtcaatttctcatagtaagtaaataattaagatttgtaattcaaattttc 40473304  T
Q  318 tctatctt 325  Q
    | ||||||    
T  40473303 tatatctt 40473296  T

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