View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_21 (Length: 282)
Name: NF12988_low_21
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 35935234 - 35934969
Alignment:
| Q |
1 |
ttcatagtagtgaaacatagtagtaaaacacatttgattttactaacaagcatatgagtcgagtctacagaagctacacatgtttacctagactctagag |
100 |
Q |
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| T |
35935234 |
ttcatagtagtgaaacatagtagtaaaacacatttgattttactaacaagtatatgagtcgagtctacagaagctacacatgtttacctagactctagag |
35935135 |
T |
|
| Q |
101 |
tttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35935134 |
tttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcaga |
35935035 |
T |
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| Q |
201 |
gtcaactctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggtaagacaatcata |
266 |
Q |
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| T |
35935034 |
gtcaactctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggtatgacaatcata |
35934969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 35940767 - 35940539
Alignment:
| Q |
37 |
attttactaacaagcatatgagtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaa |
136 |
Q |
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|||| ||||||||| ||||| | ||||||||||||||| | | |||||||||| |||| ||||| | ||||| ||| || |||||||| |||||| |
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| T |
35940767 |
atttcactaacaagtttatgatttgagtctacagaagctcaaaaagtttacctagcctctcaagtttaacaaattcgattacgacaacataatgtttgaa |
35940668 |
T |
|
| Q |
137 |
acacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcagagtcaactctgatggaaaaacattataccgtaaccaa |
236 |
Q |
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| T |
35940667 |
ccacacaggacctggctgttcttcacttgggtatggagcctttcaggagctcggacccttcagagtcaactctgatggaaaaacactataccgtaaccca |
35940568 |
T |
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| Q |
237 |
tatgcttggagtgaaggtaagacaatcat |
265 |
Q |
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| T |
35940567 |
tatgcttggaatgaaggtgaaacaatcat |
35940539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 83 - 265
Target Start/End: Complemental strand, 35928335 - 35928154
Alignment:
| Q |
83 |
tttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgag |
182 |
Q |
| |
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|||||||| ||||| |||||||| | |||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||| || |
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| T |
35928335 |
tttaccta-actctcgagtttgacagctttgattctgacaacataatgtttgaaacttacaggacctggctgttcctcactggggtatggagcctttcag |
35928237 |
T |
|
| Q |
183 |
gagctaggacccttcagagtcaactctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggtaagacaatcat |
265 |
Q |
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| T |
35928236 |
gagctaggacccttcagaatcaactctgatggcaaaacactataccgtaaccaatatgcttggactgaaggtgaaacaatcat |
35928154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 35910917 - 35910762
Alignment:
| Q |
110 |
tttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggacccttcagagtcaactct |
209 |
Q |
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|||||| |||| |||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
35910917 |
tttgattctgacaacataatgtttgaaactcacaggacctggctgttcctcactggggtatggagcctttcaggagctaggacccttcagaatcaactct |
35910818 |
T |
|
| Q |
210 |
gatggaaaaacattataccgtaaccaatatgcttggagtgaaggtaagacaatcat |
265 |
Q |
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| T |
35910817 |
gatggcaaaacactataccgtaacccatatgcttggaatgaaggtgaaacaatcat |
35910762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 254
Target Start/End: Complemental strand, 35921768 - 35921571
Alignment:
| Q |
57 |
agtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgtt |
156 |
Q |
| |
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||||||||||||||||||| ||| |||||| |||||||| |||||| | || || ||| | |||||| |||||||| |||||||||||| |||| |
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| T |
35921768 |
agtcgagtctacagaagctcaacaagtttacttagactctcaagtttgtcagcttcaattttgacatcataatgtttgaaactcacaggacctggttgtt |
35921669 |
T |
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| Q |
157 |
cttcacttgggtatggagcctttgaggagctaggacccttcagagtcaactctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggt |
254 |
Q |
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| T |
35921668 |
cctcactgggatatggagcctttgaggagctcggacccttcagagtcaactctgatggcaaaacattataccgtaacccatatgcttggaatgaaggt |
35921571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 265
Target Start/End: Complemental strand, 35915361 - 35915189
Alignment:
| Q |
93 |
ctctagagtttgaaaaatttgatgctgataacataatatttgaaacacacaggacctggctgttcttcacttgggtatggagcctttgaggagctaggac |
192 |
Q |
| |
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|||| |||||||||| || ||| ||| |||||||| |||||||| | |||||||||| ||||| ||||| || |||||||||||| | ||||| |||| |
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| T |
35915361 |
ctctcgagtttgaaagcttcgattttgacaacataatgtttgaaactcgcaggacctggttgttcctcactgggatatggagcctttcaagagctcggac |
35915262 |
T |
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| Q |
193 |
ccttcagagtcaactctgatggaaaaacattataccgtaaccaatatgcttggagtgaaggtaagacaatcat |
265 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||| |
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| T |
35915261 |
ccttcagagtcaattctgatggaaaaacattataccgcaacccatatgcttggaatgaaggtgagacaatcat |
35915189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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