View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_23 (Length: 275)
Name: NF12988_low_23
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 38999760 - 38999974
Alignment:
| Q |
35 |
aaaaatgatggtttactcataaaaaagctacaaatcaatggaaagagagaaaatatgtaaaggacttaagaacatgaaaagagtattctcacctagtaga |
134 |
Q |
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| T |
38999760 |
aaaaatgatggtttactcataaaaaagctacaaatcaatggaaagagagaaaatatgtaaaggactaaagaacatgaaaagagtattctcacctagtaga |
38999859 |
T |
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| Q |
135 |
atgaatgataacatgatgttcgatcaatccattatgtatactactagattaacatgtagattgaagacatttgtttgatcaatccatgaattgaggaaca |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38999860 |
atgaatgataacatgatgttcgatcaatccattatgtatactactagattaacatgtaggttgaagacatttgtttgatcaatccatgaattgaggaaca |
38999959 |
T |
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| Q |
235 |
agcaatgtgtgtgtg |
249 |
Q |
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||||||||||||||| |
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| T |
38999960 |
agcaatgtgtgtgtg |
38999974 |
T |
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