View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_26 (Length: 263)
Name: NF12988_low_26
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_26 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 47678466 - 47678717
Alignment:
| Q |
12 |
aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa |
111 |
Q |
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| T |
47678466 |
aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa |
47678565 |
T |
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| Q |
112 |
gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat |
211 |
Q |
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| T |
47678566 |
gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat |
47678665 |
T |
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| Q |
212 |
ttctatgatgaaataatgaaatatatatgtttaacaacttattaagttataa |
263 |
Q |
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| T |
47678666 |
ttctatgatgaaataatgaaatatatatgtttaacaacttattaagttataa |
47678717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 47689752 - 47689977
Alignment:
| Q |
12 |
aattctgagcaaggagaaacagaatttaagaacgaagtgttattgacagggaagcttcaacatcgaaatttagttaagctattaggtttctgcttacaaa |
111 |
Q |
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| T |
47689752 |
aattctaagcaaggagaaacagaatttaagaacgaagtgttgctgacagggaagcttcaacatcgaaatttagttaaactactaggtttctgtttacaaa |
47689851 |
T |
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| Q |
112 |
gaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattatatcatatttggtaagttgcaatattatctccaaccttacctttacat |
211 |
Q |
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| T |
47689852 |
aaagagaaagactactaatttatgagtttgtctccaataaaagtcttgattatatcatatttggtaagttgcaatatttcctttgaccttacctttgctt |
47689951 |
T |
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| Q |
212 |
ttctatgatgaaataatgaaatatat |
237 |
Q |
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| T |
47689952 |
ttctatgataaaagaaagagatatat |
47689977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 6511127 - 6511030
Alignment:
| Q |
66 |
cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgatta |
163 |
Q |
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| T |
6511127 |
cttcaacaccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgatta |
6511030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 27369248 - 27369133
Alignment:
| Q |
66 |
cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgattata |
165 |
Q |
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| T |
27369248 |
cttcaacatcgaaatctagttaggctacttggtttctgtctagaagggagagaaagactacttatttatgaatttgtttcaaataaaagtcttgattact |
27369149 |
T |
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| Q |
166 |
tcatatttggtaagtt |
181 |
Q |
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| T |
27369148 |
tcatatttggtaagtt |
27369133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 12808 - 12711
Alignment:
| Q |
66 |
cttcaacatcgaaatttagttaagctattaggtttctgcttacaaagaaaagaaaggctactgatatatgagtttgtccccaataaaagtcttgatta |
163 |
Q |
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| T |
12808 |
cttcaacaccgaaatttagtaagattactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgatta |
12711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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