View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_27 (Length: 262)
Name: NF12988_low_27
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47678913 - 47679155
Alignment:
| Q |
1 |
ccaaaaattacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaat |
100 |
Q |
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| T |
47678913 |
ccaaaaattacagattttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaat |
47679012 |
T |
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| Q |
101 |
gcttgaactaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatgaaaatgatcggtcatcgaagatcgattgtcgtaca |
200 |
Q |
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| T |
47679013 |
gcttgaactaatgagatattcatcatttccaaataagaattttataacaaaaaacgtggaaaatcaaaatgattggtcatcgaagatcgattgtcgttca |
47679112 |
T |
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| Q |
201 |
tatctaatgattgagcataattattttgtgatacagtggatac |
243 |
Q |
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| T |
47679113 |
tatctaatgattgagcataattgttttgtgatacagtggatac |
47679155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 47690197 - 47690306
Alignment:
| Q |
1 |
ccaaaaattacagactttggaatcgcaagattgtttgatgccaatcaaactcatggcatgacaaagaccgttgttggaacagtgtaagtattaaggaaat |
100 |
Q |
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|||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| | | ||||| |
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| T |
47690197 |
ccaaaaattacagattttggcattgcaaaattgtttgatgccaatcaaactcatggcatgacaagcaccgttattggaacttagtaagtacttaagaaat |
47690296 |
T |
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| Q |
101 |
gcttgaacta |
110 |
Q |
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||| |||||| |
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| T |
47690297 |
gctagaacta |
47690306 |
T |
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